Detail information of GWHGAAEX003112/evm.TU.scaffold_13.131
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|70607014|ref|YP_255884.1| | 2.00E-63 | diphosphomevalonate decarboxylase [Sulfolobus acidocaldarius DSM 639] |
| KOG | KOG2833 | 0 | Mevalonate pyrophosphate decarboxylase |
| nr | gi|743874607|ref|XP_010907122.1| | 0 | PREDICTED: diphosphomevalonate decarboxylase-like [Elaeis guineensis] |
| trEMBL | tr|D7TXN8|D7TXN8_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI35263.3} |
| TAIR | AT3G54250 | 0 | GHMP kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000007 | 6651681 | 6669617 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003112
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00288.25 | GHMP_kinases_N | 115 | 173 | 6.10E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01597 | MVD, mvaD | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Biosynthesis of antibiotics | map01130 | ||
| Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0019287 | Biological Process | isopentenyl diphosphate biosynthetic process, mevalonate pathway |
| GO:0008299 | Biological Process | isoprenoid biosynthetic process |
| GO:0016831 | Molecular Function | carboxy-lyase activity |
| GO:0004163 | Molecular Function | diphosphomevalonate decarboxylase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005829 | Cellular Component | cytosol |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 58.590 |
| SRR2545915 | Juvenile tuber | 67.670 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 75.370 |
| SRR5643514 | five period of Gastrodia elata | 86.230 | |
| SRR5643515 | five period of Gastrodia elata | 72.510 | |
| SRR5643524 | five period of Gastrodia elata | 83.620 | |
| SRR5643525 | five period of Gastrodia elata | 62.770 | |
| SRR5643528 | five period of Gastrodia elata | 66.630 | |
| SRR5643658 | five period of Gastrodia elata | 67.840 | |
| SRR5643659 | five period of Gastrodia elata | 64.150 | |
| SRR5643660 | five period of Gastrodia elata | 62.520 | |
| SRR5643661 | five period of Gastrodia elata | 74.450 | |
| SRR5643662 | five period of Gastrodia elata | 70.350 | |
| SRR5643663 | five period of Gastrodia elata | 62.520 | |
| SRR5643664 | five period of Gastrodia elata | 64.900 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 67.720 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 80.060 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 74.660 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 69.090 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 49.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 50.320 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 56.900 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 54.700 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 77.450 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 61.080 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 84.900 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 84.900 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 66.96 |
| Juven | Juvenile tuber | 150.45 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 65.42 | |
| Mother_Juven | Mother tuber of Juvenile | 96.42 |