Detail information of GWHGAAEX003116/evm.TU.scaffold_13.136


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08595.00E-138Synaptobrevin/VAMP-like protein
nrgi|672130812|ref|XP_008788949.1|5.97E-144PREDICTED: vesicle-associated membrane protein 727-like [Phoenix dactylifera]
Swissprottr|Q9M376|VA727_ARATH1.00E-138Vesicle-associated membrane protein 727
trEMBLtr|K3YJF1|K3YJF1_SETIT3.00E-139Uncharacterized protein {ECO:0000313|EnsemblPlants:Si014370m}
TAIRAT3G543005.00E-138vesicle-associated membrane protein 727

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000769428446953540+
Transcript Sequence

Network for GWHGAAEX003116

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module8

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13774.5Longin33962.40E-19
PF00957.20Synaptobrevin1472322.80E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0016192Biological Processvesicle-mediated transport
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms145.550
SRR2545915Juvenile tuber118.580
SRP108465SRR5643513five period of Gastrodia elata29.780
SRR5643514five period of Gastrodia elata35.680
SRR5643515five period of Gastrodia elata28.450
SRR5643524five period of Gastrodia elata37.330
SRR5643525five period of Gastrodia elata54.720
SRR5643528five period of Gastrodia elata50.770
SRR5643658five period of Gastrodia elata79.020
SRR5643659five period of Gastrodia elata40.370
SRR5643660five period of Gastrodia elata44.140
SRR5643661five period of Gastrodia elata45.910
SRR5643662five period of Gastrodia elata47.590
SRR5643663five period of Gastrodia elata50.160
SRR5643664five period of Gastrodia elata47.370
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_137.950
SRR6049655Rhizomagastrodiae_C368-T10_good_145.030
SRR6049656Rhizomagastrodiae_C368-T07_good_137.780
SRR6049657Rhizomagastrodiae_C368-T07_good_135.510
SRR6049658Rhizomagastrodiae_C368-T04_good_133.060
SRR6049659Rhizomagastrodiae_C368-T04_good_137.070
SRR6049660Rhizomagastrodiae_C368-T01_good_130.680
SRR6049661Rhizomagastrodiae_C368-T04_good_134.080
SRR6049662Rhizomagastrodiae_C368-T01_good_136.880
SRR6049663Rhizomagastrodiae_C368-T01_good_134.920
SRR6049664Rhizomagastrodiae_C368-T10_good_145.810
SRR6049665Rhizomagastrodiae_C368-T10_good_145.810
SRP279888GastroGastrodia elata tuber 55.50
JuvenJuvenile tuber32.39
Mother_GastroMother tuber of Gastrodia elata 40.68
Mother_JuvenMother tuber of Juvenile 26.92