Gene detail

Detail information of GWHGAAEX003117/evm.TU.scaffold_13.137

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|255565669\|ref\|XP_002523824.1\|	2.14E-68	conserved hypothetical protein [Ricinus communis]
trEMBL	tr\|B9SCV5\|B9SCV5_RICCO	8.00E-69	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF38550.1}
TAIR	AT3G44380	1.00E-58	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000007	6953564	6955526	+

Transcript Sequence
>GWHTAAEX003117 CTGTCATTGGCTTCTCTTGTGAGTGAACACAGCTAGCATTGTTTATCACAAATCCAAGAACCACTTGAATAACTCTCTAGCTAAGTGATTCCCTAAATATGCATTTAGTCATATATAAATATATACACCATACTAAAATTCTATGCACAATGATGGCCCAATAAACTAGGTAGCAAAACTATACATGAGTTAAGCACAGCATCAGTTGCCCCAATATTATTTTGTGTACTCATCCTAGTAGGCATGCCACAATCACTCATGGAATATGTTAGCACACTAACTTGGAGTCTCAATACATAGAAGAACCAGTTAAAAGCTCAATAACTGAGGGCAACGACCCGTTATTTTGAGGTTCTAACTTCTATTTAGCCCATGAACTATTGCCTTCAATTGAAAGCAATAGGTCACTAGAGAGCTGGGAAAGTTGTTTAGCTCATCACCTCAGCTCCTTAGGTACATTCTCTTCAAATTCTAGCTTTCTCAACTGCTTTGAAGTACCCACTAGATATCCCTAGAAGGTTCGATCAATTCAAAGCATTATTAGTATATGAAATGAAGACGACCTCTCCCTTACGATGACACAAAGTTGCATAACTTACAGAGCAACTTAATTTTGGCCATTTATCACCACTCAACCAAAAATACCAACAAGGACTTCCTTACATGCTTTATGGTGCCCTACGATGTAGTATAACACAACTCCCTAAGACAAAACCTAATGCAGAAGTTGCTTTACCTAAGCTTCTCATAATGTACTACTAGAAGGAGACTATGATGGCCTGGTACTAAATTATAAACTAATAATTTTTTATTGACATTTTATTAATGACTAACTAATTATGAAGGGATATAGATATGGTTAGACTTAAATGTTAAGCCCATGATTAAACAATTTTTAAATAAGTGATTAGTTAAATAGTTAAACCTAAAGATACATGAGTAATTGGATTTCCATGATTAATTTTACTATTATCATTAAATTGGATTTCCATGATTAATTATCATTAAATTAGTGCTAATTTTTGTTCCTGTTTATTAATTAAACATTATAAGGTAAGGAAATAGTGTGCATTTTTCGGAGTAATTTGAGAGCAAAATAGTGATTTCTTTTATTAAATAGAAAAATAAAATTGAAAGTTATTTTGAATTTTTTAATTGCCTTATATTTGATGGAATCCTATGAACATTTCTGCTTTCGGATTCGAACAGCCAGAAAGTGCCATCAAGCCTTCCTGAAAAAAACTGTTAAATCCACCGCCCCACGCTTTACTAACTAGTAATAATCTCAAAGCCAAACCCTAAACCTCGATGGCAGGCGGCAGCCGGGCTGGCTGGAGTCTCAAATCGGCGGTCCTAATCGGCGCCGCCTCCGCCGCGGCGATCGCAGCCGTTCGTCCCAAAGACCCGACCTTCGATCTGGTCTCCATCTCCCTCTCCTCCTTCCGGCTCAACCTCCCGGTGCTGGACCTGGAGCTCATCCTGGCCGTCCACGTTACCAACCCCAACGTGGTCCCCATACAGCACTCCCCCGCCACGGTGTCCATCTCCTACGCCGGGTCCCACCTCGGATCCGCCGCCCTAAGCGCCGGGTCCCACCCCCCGATGTCGTGCCGCCTCATCCGCCTCCGCGCCCGCCTCGACGGCCTCCAGCTGGCCCACCACGCCGCCGGAATCATCTCTGACGCCGCCCGCCGCCGCATGGCCCTCGACGCCGCCGTCGATATCGACGGCGCCGCCCGCGTCCTCTTCTGGACCCGTCCCTTCAGGGTTCGATTCGAGAGCCGCGTGCTCGTCGATCCCGTGTTTCTCGATGTCATCCATCAGGATAACCGCGCCCAGACCCAACTCCTCTTGTTCTGAGGAGTTGATGAGCAATTATATTTGATTTTTACTGATGTAATTCTGTAACGGTTGGTATTTGAATTCTTATTTGAAATTTACTTCAATTCCCCAATGAATGTCA

Network for GWHGAAEX003117

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03168.12	LEA_2	60	153	3.50E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0009269	Biological Process	response to desiccation

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.060
SRP064423	SRR2545915	Juvenile tuber	0.880
SRP108465	SRR5643513	five period of Gastrodia elata	3.100
	SRR5643514	five period of Gastrodia elata	3.090
	SRR5643515	five period of Gastrodia elata	3.230
	SRR5643524	five period of Gastrodia elata	3.270
	SRR5643525	five period of Gastrodia elata	3.130
	SRR5643528	five period of Gastrodia elata	1.540
	SRR5643658	five period of Gastrodia elata	1.770
	SRR5643659	five period of Gastrodia elata	3.690
	SRR5643660	five period of Gastrodia elata	5.270
	SRR5643661	five period of Gastrodia elata	4.860
	SRR5643662	five period of Gastrodia elata	5.900
	SRR5643663	five period of Gastrodia elata	4.200
	SRR5643664	five period of Gastrodia elata	5.390
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.050
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.300
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.740
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.970
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.240
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.960
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.060
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.970
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.300
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.790
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.680
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.680
SRP279888	Gastro	Gastrodia elata tuber	4.11
	Juven	Juvenile tuber	8.08
	Mother_Gastro	Mother tuber of Gastrodia elata	8.18
	Mother_Juven	Mother tuber of Juvenile	11.46