Detail information of GWHGAAEX003119/evm.TU.scaffold_13.141
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0859 | 1.00E-130 | Synaptobrevin/VAMP-like protein |
| nr | gi|743863506|ref|XP_010943809.1| | 7.90E-143 | PREDICTED: vesicle-associated membrane protein 714 [Elaeis guineensis] |
| Swissprot | tr|Q9FMR5|VA714_ARATH | 4.00E-131 | Vesicle-associated membrane protein 714 |
| trEMBL | tr|M0RFE8|M0RFE8_MUSAM | 4.00E-136 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P04710_001} |
| TAIR | AT5G22360 | 1.00E-130 | vesicle-associated membrane protein 714 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000007 | 7075794 | 7146432 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003119
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13774.5 | Longin | 29 | 108 | 1.10E-21 |
| PF00957.20 | Synaptobrevin | 125 | 211 | 1.40E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08515 | VAMP7 | SNARE interactions in vesicular transport | map04130 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016192 | Biological Process | vesicle-mediated transport |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 70.340 |
| SRR2545915 | Juvenile tuber | 92.390 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 42.110 |
| SRR5643514 | five period of Gastrodia elata | 46.790 | |
| SRR5643515 | five period of Gastrodia elata | 41.550 | |
| SRR5643524 | five period of Gastrodia elata | 42.990 | |
| SRR5643525 | five period of Gastrodia elata | 52.340 | |
| SRR5643528 | five period of Gastrodia elata | 53.870 | |
| SRR5643658 | five period of Gastrodia elata | 55.990 | |
| SRR5643659 | five period of Gastrodia elata | 48.210 | |
| SRR5643660 | five period of Gastrodia elata | 51.730 | |
| SRR5643661 | five period of Gastrodia elata | 46.170 | |
| SRR5643662 | five period of Gastrodia elata | 47.180 | |
| SRR5643663 | five period of Gastrodia elata | 51.060 | |
| SRR5643664 | five period of Gastrodia elata | 57.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 34.360 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 24.640 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 37.660 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 29.110 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 35.230 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 29.720 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 30.070 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.070 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 21.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 29.790 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 29.790 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 69.87 |
| Juven | Juvenile tuber | 73.81 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 51.43 | |
| Mother_Juven | Mother tuber of Juvenile | 79.09 |