Gene detail

Detail information of GWHGAAEX003132/evm.TU.scaffold_13.169

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|159039901\|ref\|YP_001539154.1\|	1.00E-31	regulator of chromosome condensation, RCC1 [Salinispora arenicola CNS-205]
nr	gi\|568837899\|ref\|XP_006472955.1\|	0	PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Citrus sinensis]
Swissprot	tr\|Q9FN03\|UVR8_ARATH	2.00E-50	Ultraviolet-B receptor UVR8
trEMBL	tr\|A0A067GVF2\|A0A067GVF2_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO83668.1}
TAIR	AT5G42140	0	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000007	8581708	8609392	-

Transcript Sequence
>GWHTAAEX003132 GCAAAACTTGTACGTCCGCCTCGTTTTTCAAGATTTCATACCCGCACTTTTGGTTGTCTTTTAGTGTGGGTGGCCGCAGATTGCTTCGCCGTTACGCCAGCTCCGGCGGTGCCTGATCACAGGGTTAGAATCCATCCTGAAGGAGACACCCACCAGTGGCCTCACACTTCCTGCATTACAGTTTCTTCTGAAACGCTTGTTTTCTTGAAGACAGTTACTGTGATCTCTAGCCATCATCATCCGCCTATTCTTCCTCTTCTTCTTGTCGTTCTTCTTCTTTTTCGGGCCTAGGGGTTGAGGAGTATCTCTTTCTGTGAACTGATTGATGAAGGTCGGAAGGAAGATCTGCCATCTATGACGACTAGGAGTCCAGGCGATCGGTGCGGGTGGAGCTTCGGAGCAACTCGCACATGGAATGGAAGATCTCCTTGGCCATGAGTACGCAGATCTTGACATCGAGAAGGCACTGATTACTTTGAAGAAAGGTACTCAACTGCTCAAGTATGGTCGCAAAGGGAGGCCTAAATTTTACCCATTTAAATTATCAAATGATGAATCATCACTTATTTGGATCTCAAATAGTCGGGAGAAAAGTTTGAGATTGTCTTCAGTTTCAAAAATCTTTCCTGGACAAAGAACACCTGTTTTCCAAAGATATCTGCGCCCTGAGATTGATTTTTTGTCCTTTTCCCTCTTATATAACAATGGAAGACGGTCTCTTGATCTGATATGCAAAAATAAAATTGAAGCGGAAGCGTGGTTTACTGGCCTGAGGGCTCTTATAACATCTGGTCAATATGGGCGTATAAAGATTGATGGTTGGACTGATGAGAGGAATTGCCTTCATAGTGACAAGGATTTGATATCCAGCCGTCTAAGTGATAGGTCTCTTGCTATCGTACTTAATTTTGCTGACAAAAAGCTAAGCAACCCCACGGCACCTAAAGGTTCTTTACAGTATTCAGCATATTTTGAAGAAGCAGATGTTAGAACTATGCATGCAAAGGGATCTTCATCAGATACTTTCAGAGTCAGTGTTTCGAGCATTCCAAGCTCTTCCAGTCATGGTTCAGCTCAAGATGATTCTGAGGCTTATGGGGATGTATATGTGTGGGGTGAGGTTGTATGTGATTCTTCCAGAACTAACACTGATGGAAATATTTCTCATTTCTCTGTGAAAAATGATATTCTTCTTCCCAAGCCGCTGGACTCCAATGTTATTTTAGACATTCAACATGTTGCCTGTGGATTCAAGCACGCCGCTTTTGTCACCAGACACGGAGAACTATTTACATGGGGTGAAGAATCAGGTGGCCGACTTGGTCATGGTGTAGGAGCTGATGCAGTTTACCCTCGTCTTGTTGAATCTTTATCAGCCTTCAGAATTGAATTTGTTGCTTGTGGGGAATTTCATACATGCGCTGTTTCTACAAGTGGCGAACTTTATACTTGGGGAGATGGCACTCATAAGGCAGGACTACTTGGTCATGGTACAGGTATTAGTCACTGGATTCCTAAAAGAATTTCTGAACCTCTTGAAGGACTTCAAGTCATGTGTGTTTCATGCGGAACTTGGCACACAGCATTGCTAACTACAGCGGGGCGATTATTCACATTTGGTGATGGTACTTTTGGTGCTTTGGGCCATGGAAATAGAGAGAGTGCCTTGTATCCTAGGGAAGTGGATTCATTAACAGGTTTGAAGACCATTACTGTTTCCTGTGGTGTCTGGCACACGGCTGCAATTGTGGAGGTTATTGTGACACAATCTATCGCATGCTCTGGCAAATTGTTCACTTGGGGTGATGGGGACAAATATCGTCTCGGTCAGGGTGACAAGGAGCCTCGCCTTAAGCCAACTTGTGTGCCATCATTAATAGATTACAATTTTCAAAAGATAGCATGCGGCCATACACTTACAATTGGCTTGACAACTTCAGGCAATGTTTTTACAGTAGGTAGCACTGTTTATGGTCAGCTTGGTAATCCTCATACTGATGGAAAGCTTCCTTGCTTAGTTGAGGATAAGCTTGCCAATGAGTCTGTAAAAGAGGTTTCTTGTGGTTCTTATCATGTTGCTGTTTTGACATCAAGGAATGAAGTTTATACATGGGGAAAGGGTGCCAATGGACGATTAGGACATGGAGACCTTGAAGATCGAAAGACACCTACGCTTGTTGAAGCTTTGAAGGACAGGCCAGTGAAACACATAGCTTGTGGGGGAAGTTTCACTTCTGCCATATGTTATCATAAATGGGTTAGTACTGCTGAGCAATCTTTATGCACAGCCTGTAGGCAAGCTTTTGGTTTTACTCGCAAGAGGCATAATTGCTACAATTGCGGCCTTTTACATTGCCATTCTTGCAGCTCAAAAAAGGCATTGAGGGCTGCATTGGCTCCTGACCCCAAAAAACTATATCGTGTTTGTGATTCTTGTTCTTTGAAATTGAATAAAGTTCTCAATTTTGGTAAAATGTACGACAAGAAAAGCGCATTACCTCGCTTATCAGGTGACAGCAAAGACCATTCTGATAAAATCGATTTCAAAATACCCAAGACTGCTTATTCTAGCAATTCGGATTTAATTAAATGTTTTGATGATAAAGCAGCAAAACAAGGGAAGAAATCTGATTCTTTACCTTTGGTTCGACCTAAGATTTCTTCGTTGTTACAGCTTAGAGATGTTGCCTTTTCTATTGGCATTGACATGCAACGAGCAAATCGTAAGCTAACTTTCTTGCCAGCAGTTCAATCCTCCAATCATTCTGGATTATCTCCGTTCCTAAGAAGACCTAGCCCGCCACGTTCTGCTACTCCTATTCCTACAACGTCGGGCCTTTCATTCTCTAAAAGTGTGGCTGATAATCTTAAGAAAACAAATGAGCTTCTAAACCTAGAAGTTCAAAAGCTGTGTGGCCAGGTTGGTAGCTTGAGACAGCTCAGTGAATTTCAAGAGTCAGAGTTGCAGAAGTCAGCAAAGAAAGTTCAAGAAGCTTTGTTGATTGCTGCAGAGGAATCTGCAAAAGCTAAAGCTGCAAAAGAAGTCATAAAGTCTCTTTCATCACAACTCAAAGACATGGCAGAGAGGTTCCCCGAGGGCCTTGATGGTGTTGAAGCTATGAGATGGAGGCGCATTGCCGCCAATGGAATCAATGGCTTGGATGCTGCTCATCAGGAAGATGCAACTGTGGCTCGAACCCGGGTGAACGGTACAAACAATGATTCTATAGCCGGAGTTTCTGAACCCGATAGTAGCGATGCGAAGTCCCTCCAAAATATTGAGAATGGCACTAAGAGCAGAATCATCCCGATTCCCGCGGATGTTTTGACTGACACGGAGTGGATCGAACAGTATGAACCTGGTGTATATATAACCCTCATAGCCCTCAGGGACGGCTCTCGAGATCTCAAGCGAGTGCGGTTCAGCCGGAGAAGATTTGGGGAGCAGCAGGCAGAGGCGTGGTGGTCGGATAACCGCACGAAGGTTTACGAGAAATTCAATGTCCGGGGCTCTTGATAGTTCTTCGTCGTAGGAGCGGAATTTTTTGGCATATTTTAGAGCAGTTAGCAGTAGTTTTATAAGCACTTTTTTTGTAATTTTTTTTTTTCTTTGGGGGTTGGTGGAGAAACGGCTGCTGCAGTAAGCAAAATGCTTGTTTGTAATCATATAAAATTATCCTTTTATTTTATGGCTGTTTTCATTTATGTGTATAGATAAAGTCATGCTCAAGGAAGGCCCCATTTGAACTTGGCCTATCTCTACTGTGCTGTGTTTATGGTGCAGTTTATAATTGAGTTAATTAGTGCAGTTAGTGAGGCGTATTATCATTATTGAAATTATTATTCGTGGTAACACTATATAATATTTATATATTTTTGAATTATG

Network for GWHGAAEX003132

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00415.17	RCC1	289	337	2.40E-09
PF00415.17	RCC1	340	392	7.40E-08
PF00415.17	RCC1	396	444	2.80E-12
PF00415.17	RCC1	456	503	6.70E-12
PF00415.17	RCC1	508	557	5.60E-07
PF00415.17	RCC1	562	609	1.30E-14
PF01363.20	FYVE	613	678	8.40E-12
PF13713.5	BRX_N	866	894	1.10E-13
PF08381.10	BRX	974	1028	5.00E-28

Protein Sequence

>GWHPAAEX003132
MEDLLGHEYADLDIEKALITLKKGTQLLKYGRKGRPKFYPFKLSNDESSLIWISNSREKSLRLSSVSKIFPGQRTPVFQRYLRPEIDFLSFSLLYNNGRRSLDLICKNKIEAEAWFTGLRALITSGQYGRIKIDGWTDERNCLHSDKDLISSRLSDRSLAIVLNFADKKLSNPTAPKGSLQYSAYFEEADVRTMHAKGSSSDTFRVSVSSIPSSSSHGSAQDDSEAYGDVYVWGEVVCDSSRTNTDGNISHFSVKNDILLPKPLDSNVILDIQHVACGFKHAAFVTRHGELFTWGEESGGRLGHGVGADAVYPRLVESLSAFRIEFVACGEFHTCAVSTSGELYTWGDGTHKAGLLGHGTGISHWIPKRISEPLEGLQVMCVSCGTWHTALLTTAGRLFTFGDGTFGALGHGNRESALYPREVDSLTGLKTITVSCGVWHTAAIVEVIVTQSIACSGKLFTWGDGDKYRLGQGDKEPRLKPTCVPSLIDYNFQKIACGHTLTIGLTTSGNVFTVGSTVYGQLGNPHTDGKLPCLVEDKLANESVKEVSCGSYHVAVLTSRNEVYTWGKGANGRLGHGDLEDRKTPTLVEALKDRPVKHIACGGSFTSAICYHKWVSTAEQSLCTACRQAFGFTRKRHNCYNCGLLHCHSCSSKKALRAALAPDPKKLYRVCDSCSLKLNKVLNFGKMYDKKSALPRLSGDSKDHSDKIDFKIPKTAYSSNSDLIKCFDDKAAKQGKKSDSLPLVRPKISSLLQLRDVAFSIGIDMQRANRKLTFLPAVQSSNHSGLSPFLRRPSPPRSATPIPTTSGLSFSKSVADNLKKTNELLNLEVQKLCGQVGSLRQLSEFQESELQKSAKKVQEALLIAAEESAKAKAAKEVIKSLSSQLKDMAERFPEGLDGVEAMRWRRIAANGINGLDAAHQEDATVARTRVNGTNNDSIAGVSEPDSSDAKSLQNIENGTKSRIIPIPADVLTDTEWIEQYEPGVYITLIALRDGSRDLKRVRFSRRRFGEQQAEAWWSDNRTKVYEKFNVRGS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	Molecular Function	metal ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.660
SRP064423	SRR2545915	Juvenile tuber	9.140
SRP108465	SRR5643513	five period of Gastrodia elata	12.650
	SRR5643514	five period of Gastrodia elata	13.370
	SRR5643515	five period of Gastrodia elata	12.500
	SRR5643524	five period of Gastrodia elata	13.560
	SRR5643525	five period of Gastrodia elata	16.940
	SRR5643528	five period of Gastrodia elata	17.230
	SRR5643658	five period of Gastrodia elata	14.170
	SRR5643659	five period of Gastrodia elata	9.990
	SRR5643660	five period of Gastrodia elata	9.530
	SRR5643661	five period of Gastrodia elata	9.740
	SRR5643662	five period of Gastrodia elata	8.710
	SRR5643663	five period of Gastrodia elata	9.090
	SRR5643664	five period of Gastrodia elata	8.450
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.940
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.320
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.110
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.810
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.450
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.420
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.070
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.030
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.210
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.300
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.370
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.370
SRP279888	Gastro	Gastrodia elata tuber	8.91
	Juven	Juvenile tuber	12.09
	Mother_Gastro	Mother tuber of Gastrodia elata	24.85
	Mother_Juven	Mother tuber of Juvenile	21.58