Detail information of GWHGAAEX003138/evm.TU.scaffold_13.176


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672128627|ref|XP_008787807.1|4.04E-143PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Phoenix dactylifera]
Swissprottr|Q689D6|RPD1_ARATH5.00E-19Protein ROOT PRIMORDIUM DEFECTIVE 1
trEMBLtr|Q10G25|Q10G25_ORYSJ7.00E-102Os03g0646200 protein {ECO:0000313|EMBL:BAF12681.1}
TAIRAT1G718504.00E-72Ubiquitin carboxyl-terminal hydrolase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000789881258999048+
Transcript Sequence

Network for GWHGAAEX003138

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module14

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11955.7PORR642788.40E-41
PF11955.7PORR2753742.10E-36
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms30.320
SRR2545915Juvenile tuber5.610
SRP108465SRR5643513five period of Gastrodia elata7.920
SRR5643514five period of Gastrodia elata7.920
SRR5643515five period of Gastrodia elata8.630
SRR5643524five period of Gastrodia elata5.210
SRR5643525five period of Gastrodia elata14.060
SRR5643528five period of Gastrodia elata29.030
SRR5643658five period of Gastrodia elata14.830
SRR5643659five period of Gastrodia elata3.240
SRR5643660five period of Gastrodia elata3.320
SRR5643661five period of Gastrodia elata2.430
SRR5643662five period of Gastrodia elata2.280
SRR5643663five period of Gastrodia elata2.860
SRR5643664five period of Gastrodia elata2.450
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.710
SRR6049655Rhizomagastrodiae_C368-T10_good_111.930
SRR6049656Rhizomagastrodiae_C368-T07_good_17.200
SRR6049657Rhizomagastrodiae_C368-T07_good_18.370
SRR6049658Rhizomagastrodiae_C368-T04_good_111.800
SRR6049659Rhizomagastrodiae_C368-T04_good_114.500
SRR6049660Rhizomagastrodiae_C368-T01_good_16.530
SRR6049661Rhizomagastrodiae_C368-T04_good_19.080
SRR6049662Rhizomagastrodiae_C368-T01_good_16.760
SRR6049663Rhizomagastrodiae_C368-T01_good_15.040
SRR6049664Rhizomagastrodiae_C368-T10_good_19.040
SRR6049665Rhizomagastrodiae_C368-T10_good_19.040
SRP279888GastroGastrodia elata tuber 1.64
JuvenJuvenile tuber4.08
Mother_GastroMother tuber of Gastrodia elata 20.50
Mother_JuvenMother tuber of Juvenile 11.96