Detail information of GWHGAAEX003141/evm.TU.scaffold_13.182


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|302759691|ref|XP_002963268.1|9.83E-63hypothetical protein SELMODRAFT_405021 [Selaginella moellendorffii]
Swissprottr|Q9FS16|EXTN3_ARATH7.00E-11Extensin-3 (Precursor)
trEMBLtr|D8QY50|D8QY50_SELML4.00E-63Putative uncharacterized protein {ECO:0000313|EMBL:EFJ35139.1}
trEMBLtr|D8QY50|D8QY50_SELML4.00E-52Putative uncharacterized protein {ECO:0000313|EMBL:EFJ35139.1}
trEMBLtr|D8QY50|D8QY50_SELML6.00E-09Putative uncharacterized protein {ECO:0000313|EMBL:EFJ35139.1}
TAIRAT1G213102.00E-10extensin 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000792800739281342-
Transcript Sequence

Network for GWHGAAEX003141

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04554.12Extensin_21301829.30E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0009664Biological Processplant-type cell wall organization
GO:0005199Molecular Functionstructural constituent of cell wall

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms3581.370
SRR2545915Juvenile tuber10929.900
SRP108465SRR5643513five period of Gastrodia elata28689.200
SRR5643514five period of Gastrodia elata17964.600
SRR5643515five period of Gastrodia elata25650.700
SRR5643524five period of Gastrodia elata26691.800
SRR5643525five period of Gastrodia elata5146.360
SRR5643528five period of Gastrodia elata15862.200
SRR5643658five period of Gastrodia elata10124.300
SRR5643659five period of Gastrodia elata29362.300
SRR5643660five period of Gastrodia elata24362.200
SRR5643661five period of Gastrodia elata31355.400
SRR5643662five period of Gastrodia elata14191.400
SRR5643663five period of Gastrodia elata22187.800
SRR5643664five period of Gastrodia elata10521.700
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19627.460
SRR6049655Rhizomagastrodiae_C368-T10_good_128328.200
SRR6049656Rhizomagastrodiae_C368-T07_good_112463.700
SRR6049657Rhizomagastrodiae_C368-T07_good_17380.310
SRR6049658Rhizomagastrodiae_C368-T04_good_14184.540
SRR6049659Rhizomagastrodiae_C368-T04_good_13355.870
SRR6049660Rhizomagastrodiae_C368-T01_good_18970.770
SRR6049661Rhizomagastrodiae_C368-T04_good_16495.250
SRR6049662Rhizomagastrodiae_C368-T01_good_110956.700
SRR6049663Rhizomagastrodiae_C368-T01_good_19191.730
SRR6049664Rhizomagastrodiae_C368-T10_good_113118.200
SRR6049665Rhizomagastrodiae_C368-T10_good_113118.200
SRP279888GastroGastrodia elata tuber 5,587.10
JuvenJuvenile tuber14,892.40
Mother_GastroMother tuber of Gastrodia elata 8,167.53
Mother_JuvenMother tuber of Juvenile 12,979.03