Detail information of GWHGAAEX003143/evm.TU.scaffold_13.187


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|333911089|ref|YP_004484822.1|4.00E-6850S ribosomal protein L3 [Methanotorris igneus Kol 5]
KOGKOG0746060S ribosomal protein L3 and related proteins
nrgi|703138965|ref|XP_010106863.1|060S ribosomal protein L3 [Morus notabilis]
Swissprottr|P35684|RL3_ORYSJ060S ribosomal protein L3
trEMBLtr|W9S5Y9|W9S5Y9_9ROSA060S ribosomal protein L3 {ECO:0000313|EMBL:EXC12323.1}
TAIRAT1G431700ribosomal protein 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000796598049680768+
Transcript Sequence

Network for GWHGAAEX003143

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00297.21Ribosomal_L313701.80E-193
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02925RP-L3e, RPL3 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms46.630
SRR2545915Juvenile tuber55.370
SRP108465SRR5643513five period of Gastrodia elata114.700
SRR5643514five period of Gastrodia elata116.260
SRR5643515five period of Gastrodia elata112.740
SRR5643524five period of Gastrodia elata112.660
SRR5643525five period of Gastrodia elata48.360
SRR5643528five period of Gastrodia elata53.750
SRR5643658five period of Gastrodia elata40.780
SRR5643659five period of Gastrodia elata133.330
SRR5643660five period of Gastrodia elata131.380
SRR5643661five period of Gastrodia elata127.120
SRR5643662five period of Gastrodia elata111.410
SRR5643663five period of Gastrodia elata98.350
SRR5643664five period of Gastrodia elata87.140
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_183.980
SRR6049655Rhizomagastrodiae_C368-T10_good_169.360
SRR6049656Rhizomagastrodiae_C368-T07_good_1106.550
SRR6049657Rhizomagastrodiae_C368-T07_good_178.580
SRR6049658Rhizomagastrodiae_C368-T04_good_163.370
SRR6049659Rhizomagastrodiae_C368-T04_good_149.820
SRR6049660Rhizomagastrodiae_C368-T01_good_179.850
SRR6049661Rhizomagastrodiae_C368-T04_good_172.820
SRR6049662Rhizomagastrodiae_C368-T01_good_1127.100
SRR6049663Rhizomagastrodiae_C368-T01_good_199.280
SRR6049664Rhizomagastrodiae_C368-T10_good_1116.790
SRR6049665Rhizomagastrodiae_C368-T10_good_1116.790
SRP279888GastroGastrodia elata tuber 120.91
JuvenJuvenile tuber169.66
Mother_GastroMother tuber of Gastrodia elata 64.94
Mother_JuvenMother tuber of Juvenile 107.61