Detail information of GWHGAAEX003144/evm.TU.scaffold_13.188
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|695041392|ref|XP_009408302.1| | 2.01E-39 | PREDICTED: ethylene-responsive transcription factor ERF113-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FH54|EF114_ARATH | 3.00E-36 | Ethylene-responsive transcription factor ERF114 |
| trEMBL | tr|B8BND0|B8BND0_ORYSI | 2.00E-36 | Putative uncharacterized protein {ECO:0000313|EMBL:EEC68921.1} |
| TAIR | AT5G61890 | 9.00E-36 | Integrase-type DNA-binding superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000007 | 9682627 | 9684755 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003144
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00847.19 | AP2 | 118 | 167 | 2.40E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AP2/ERF-ERF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.180 |
| SRR2545915 | Juvenile tuber | 1.760 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 58.640 |
| SRR5643514 | five period of Gastrodia elata | 8.080 | |
| SRR5643515 | five period of Gastrodia elata | 154.220 | |
| SRR5643524 | five period of Gastrodia elata | 46.250 | |
| SRR5643525 | five period of Gastrodia elata | 19.290 | |
| SRR5643528 | five period of Gastrodia elata | 164.040 | |
| SRR5643658 | five period of Gastrodia elata | 24.580 | |
| SRR5643659 | five period of Gastrodia elata | 17.960 | |
| SRR5643660 | five period of Gastrodia elata | 9.310 | |
| SRR5643661 | five period of Gastrodia elata | 20.340 | |
| SRR5643662 | five period of Gastrodia elata | 54.600 | |
| SRR5643663 | five period of Gastrodia elata | 13.610 | |
| SRR5643664 | five period of Gastrodia elata | 12.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.570 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.230 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.950 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.880 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.030 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.520 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.220 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.530 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.970 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.100 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.100 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.20 |
| Juven | Juvenile tuber | 1.18 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 83.50 | |
| Mother_Juven | Mother tuber of Juvenile | 341.00 |