Detail information of GWHGAAEX003147/evm.TU.scaffold_13.195
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|186681165|ref|YP_001864361.1| | 8.00E-27 | hypothetical protein Npun_R0666 [Nostoc punctiforme PCC 73102] |
| KOG | KOG1124 | 0 | FOG: TPR repeat |
| nr | gi|743887497|ref|XP_010910390.1| | 0 | PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Elaeis guineensis] |
| Swissprot | tr|O23052|Y1515_ARATH | 0 | Uncharacterized TPR repeat-containing protein At1g05150 |
| trEMBL | tr|G7I6P0|G7I6P0_MEDTR | 0 | Calcium-binding EF hand protein {ECO:0000313|EMBL:AES60424.2} |
| TAIR | AT1G05150 | 0 | Calcium-binding tetratricopeptide family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000007 | 9915418 | 9918395 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003147
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13432.5 | TPR_16 | 219 | 278 | 0.0095 |
| PF13432.5 | TPR_16 | 310 | 358 | 2.30E-05 |
| PF13431.5 | TPR_17 | 382 | 412 | 6.20E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005509 | Molecular Function | calcium ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.870 |
| SRR2545915 | Juvenile tuber | 10.170 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 23.550 |
| SRR5643514 | five period of Gastrodia elata | 24.770 | |
| SRR5643515 | five period of Gastrodia elata | 21.020 | |
| SRR5643524 | five period of Gastrodia elata | 22.280 | |
| SRR5643525 | five period of Gastrodia elata | 32.800 | |
| SRR5643528 | five period of Gastrodia elata | 25.090 | |
| SRR5643658 | five period of Gastrodia elata | 23.680 | |
| SRR5643659 | five period of Gastrodia elata | 13.210 | |
| SRR5643660 | five period of Gastrodia elata | 14.500 | |
| SRR5643661 | five period of Gastrodia elata | 15.280 | |
| SRR5643662 | five period of Gastrodia elata | 17.160 | |
| SRR5643663 | five period of Gastrodia elata | 13.470 | |
| SRR5643664 | five period of Gastrodia elata | 21.890 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.590 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.270 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.730 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 26.240 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 31.810 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 36.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 24.980 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 30.160 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 24.120 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 25.950 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.750 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.750 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.41 |
| Juven | Juvenile tuber | 18.71 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 27.29 | |
| Mother_Juven | Mother tuber of Juvenile | 19.89 |