Gene detail

Detail information of GWHGAAEX003148/evm.TU.scaffold_13.196

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1832	HIV-1 Vpr-binding protein
nr	gi\|743887091\|ref\|XP_010910305.1\|	PREDICTED: DDB1- and CUL4-associated factor homolog 1-like [Elaeis guineensis]
Swissprot	tr\|Q9M086\|DCAF1_ARATH	DDB1- and CUL4-associated factor homolog 1
trEMBL	tr\|F6H2W9\|F6H2W9_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46680.1}
TAIR	AT4G31160	DDB1-CUL4 associated factor 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000007	9940409	9962459	-

Transcript Sequence
>GWHTAAEX003148 ATTTTCGATCACTGCGCATTTTCGTTTCGTTACCAGCTTGTCTTTTGGACAATCTATACGCATGTCTTATAATCCGATACTTCTCTCTGATCACTCTCAACAAGTGCCTCCCGGATTGACTCGCCTTCCCTCGCTCTCCAACCATCTGACCCGTGTTTTTCGCCGATTTTGACAAGCAAAGAATCTCAAGCACACGGAAACCAAACCCTAGAGGAACATTTTCGATCTTCTCTGGCGATGGAGGCCAACGTTGAACCCCAAGCGGCGGTTGCAACTGCGGTACAGTCGGAAGAGGCTGGAGAGGCGCCAGAGCCGACGACGGAATCGGATGGAACGGAGGACGATAAACTGCTGTCTGCAGCTCAACGGCTTATTTCGAAAATTATTGCATCGCAGGAAAACCCTAATCCCATGCTTCTTCACGCACTCGCGTCCATTCTTGAAAAACAGGAGGCCAGGTACATGCAAGATTCGGCATCTTCTAACACTGCGAGGTCTTCTCATATTATTGGAAGGTTATGCAACATAGTAAGGGAAAATGTGGAGTTTTATGAGCTTATTTCATCTAAGTTCCTGTCAGAAAGTAGATATACTATAAGAATACGAGCTGCTGCTGCTAGGGTCCTTTTAAGTTGTCCGTCATCTGGAATGTATCATCTTGTTTTTGATGATGCCGTTCATGATAATTTGAAAAGCTGGGTAGTGGAGGACAATCTTGAAGGTTCTGCTGATGCGGGTGATTGGAAGCATGATCTGAGAAGCCATAAGCCCACAGACTCTGAAATGCTCAAAACTTATGCTACAGGACTTCTTGCTATGTCACTAGCTGGTGGTTCACAGGTTGTTGAAGATATTTTGACATCTGGTCTTTCGGCAAAGCTTATGCGGTACTTGCGAGTTAGAATTCTTGGAGAGTCCAATTCTAGCTTAAAGGACAGTTTTCAAATGGAAGCTAAGCATTCTACAGTTCTTAGTTCAACAAAAAGTAGAGAAGAAAATAAGGGGAGGTATCGACAGGTTTTGGATGGGTCAAGAAAGATAGATGAGGTTTTATTAGGTGATCAAAATTCTGAGAGGGATCGAGAGAAGAATAATAGTGTTAGATTGGCACATGATGAAGATTGCTATCGAGAAGTTAGTGAGCCTCTACGGTCTGAACTTATTGCATCTTCAACAGATGTTGGCATTCATGATACAGACATGGAAGAGAATGTTGTTGCTGATGACGGATGGCACAATAGAGATCATCTTGATGGAAGGTTCAAGTTGGTTGAGAGGCAGGTTGCTAGACCGACACACGAAGATCTTGATGAAAGTGTTAGAGATGATTCTATTCGTCGACGGATAAATCGAGGCTTGCTTAGGTCAAGAGGAAAGGGAAGGACACTTGAAAGCACCTTGGAAAATGAAAGGCTTCTGTTGTCTCCAGCTTCTGGGTTAGCATTAGGTGAAACAACTAAAAGCTATAAAGATAGGAATATATGCAAAACTGAAGATGCACGGAGGGTGTGTAATGCTAAAAAGAACCTGATTAGGACTGATGCAGATCTTTCTAGCTTAGAAGAGGAAGATGTTGATAGATTTCAGGAATGTCTTGTTGGCTCACAGGATATATCTGATATTGTAAAGAAAGCAACTAAAGCTGCTGAAGCTGAAGCCAGAGCAGCTAATGCTCCTGCAGAGGCTATTAAAGCTGCTGGTGATGCAGCAGCTGAATTAGTCAGATCTTCAGCATTCGAGGTATGGAAAATTACCAATGAGGAGGAAGCTGCTGTACAAGCTGCTTTTAAAGCTGCAGCCACTGTGGTAGATGCAGCTATTGCAACCAAAGCCACAAGTGATGGCTTGTTGGGGTTAAATCATACACGATGCGAGGTCGAAGAGGAGGCAGAAGAGTTTTTTATTTTGGATGGAGAATCTCTTGCTCAACTGCGAGAGAAGTATTGCATTTTATGTCTGGAAATATTGGGTGAATATGTGGAAGCTTTAGGACCTGTTTTGCATGAAAAAGGTGTGGATGTCTGCCTTGAATTGCTGCAACGTTGTTCCATGGATGGAGAAACAATAGTAAATTTGGCATTGCTTCCTGAGGTTCTAAAGCTTGTGTGTGCCTTAGCTGCTCATAAAACATTTTCTGCCTTATTTGTCGATCGAGGTGGCATACAAAAACTTTTGGCGATTCATAGAACTTCTCATACATTTGTGGGTCTTTCATCCTGCTTGTTCACGATTGGTTCTCTTCAGGGAGTCATGGAACGAGTGTGTGCACTGTCTTCTCACACTGTGTACCAAGTTGTTGAGTTGGCCCTTAAGCTTCTCGAATGTTCTCAAGACCTAGCTAGGAAAAATGCTGCCATTTTTTTTGCTGGTGCCTTTGTTTTTAGAGCAATATTAGAGTCCTTTGATGTGCAAGATGGTATGCAAAAGATTCTTCATCTTTTGAGAAAGTGTTCGGAAATTTTTTCTTCACAAGAGAAGGCAATTGCTTATCATACTTGTGTTGCACTACGCCAGTATATCAGAGCGCATCTTCTTTTGTTTGTTGATTCACTTCGGCCAAATAAAAGTACCAGGAATGTAGTACGAGGTACCTCTAATGCAAGAGCTTCTTACAAGCCGCTTGACATCAGCAATGAGGCTATGGATGTGGTATTCCGGCAAATACAGCGTGACAGGAAACTTGGATCAGCGCTTGTAAGATCTTGTTGGCCAGTTATGGATAAGTTCTTGGCTTCTAATGGCCATATAACTATGTTGGAGCTTTTCCAGGCCTTAACACTTGAACATTATGTTCAAGATTTAGCTCCGTATGCTCTTGGCGTTCTTCATATTGTTACCTTGGTACCCTATGGCCGTAAGTTAATTGTAAATGCTACTTTGAGGAATGAACGTTTGGGAATGGCTATTATTCTAGATGCAGTAAATGGTGCTGGATATATAGATCCTGAGGTGATTCACCCAGCTCTGAGTGTGCTGGTTAATTTAGTTTGCCTGCCGCCTTCTATAAGCACCAAACCTTCTGGGCCTGTACCCAGTCAGCAGCCATTGTCCACTAACACTATGAATGCCTCTAATTTAGAGATTAGGGAAAGGCACTCAGAGCGGAATATGGGAGACCAAATTGCTTCATTATCTGTTCAGTATGAGTCTCGGGAGTCAAACCTATTGGAAAGAGGTTCTGAAACAGTGCCATTCAGCTCACAAAGAAGTGTTTTTTTCAAGCCTTCTGGATTTGTTGGAGATCGCAGGATATGCTTAGGACCTGGAGCTGGCTGTGCTGGCCTTGCTGCTCAATTAGAACAGGGATATCACCAAGCAAGGCAAGCTGTACGGTCAAATAATGGAATAAAAGTTTTACTACATCTTCTCCAACCTCGTATGATTACGCCACCACAGGCAATTGATTCTATCAGGGCTCTTGTGTGTCGTGTCTTGCTTGGTTTGGCCAGAGATGAAACAATTGCCCACATTCTAACGAAGCTCCAGGTAGGGAAGCTGTTGTCGGAGCTAATTCGAGATTTAGGCATCCAGGCCTCTGGAAATGATCAAAACAGGTGGCAGGCTGAACTCATTCAAGTGGCCGCTGAATTAATAGCTATTGTGACAAACTCTGAACGTGCCAGCACTATAGCAGCTACTGATGCTGCCGCTCCCACGTTGAGGCGCATTGAAAGAGCGGCAATTGCTGCAGCTACACCTATTACATATGACTCCAGGGAACTGTTACTTCTTATACATGAGCATCTCCTGAGCTCTGGCTTAACTGCCACAGCTGCTGCATTACAGAAAGAGGCTGATTTGAGAAAACTGCCATTTCTCCATCAAGTATCATGCCAAGAGACTTCGTCCCTTCAACTTCACTGGCCATCTGGTCGTGTACCTTATGGATTTATTTTAGATGCTAACAAGTTATCAGTTCGTGATGAGGATGCTAGCCTAAAGCCTGATATTTTTCAGAGTTGTTCACGGAAGAAACCGCTAGTTTTTGCAACTAACTTGTTACTAGAAAAAAAGCAAGTGTCAAACTCGTTAGTCATAAATGGTTTTGCTAGTTCCTCAAAGAATCAGTCTGCAGCTCATGGTGCGTTGGAGTTGTCACTGTCTAAAACCACATCTGACTCAGATGCCGATTATCATGCAAAAACACCAATACTTCTGCCAATGAAAAGGAAATTATTTGAACTTAAGAACGCCAACATCACGCCACCAGCGGCAAAACACCTTGCAGTTGGTGACCTTTCCTTTCAGGCATCTTCATATCAGACTCCAACTATTGAGCGTAGAAATTGCTTGTCAATAGATGGATTTAATCAATCTTCTACCTGCAATTTGACTCAACAACACCCATCTGTTCGAATCCATACAAATAACTTTCCAGTAGATTCCTCTGATGACACCCATTGGGTGAGTCAGTCTGGTGGTGCACCTGTTTCACCTACGCTCCATAAGCATGGGGTTTCTGTTGAGCTACTGCCTGGAAATACTGAGCGGATGACCCTTGACACTTTGGTTGTGCAGTATTTGAAGCACCAACATCGACAATGCTCTGCTCCCATAACAACATTACCTCCTCTTTCTCTCCTTCACCCCCACGTCTGTCCTGAGCCCAACTGCAAACTCAATGCTCCTGCAAATGTTACTGCACGGGTAAGCTCTCGTGAGGTTGGGACGCAGCATTGTGGTATCCATATTGGCCGTAGAGATCATCAGTATGTGCATAGCAGGTTTAGACCATGCCGCACATGTCGAGATGATGAGGCCCTTTTAACTTGCATTACATTCTTGAGTAATTCCAATCACATTGCCACCGGAAGCCATTTAGGTGAGCTGAGAATTTTTGACACTAATAAAGGCAATGTGTTGGAGAGTTTTGATGGCCATCAGTCACCTATTCAGATGGTTCAGTCAGCATTTTCTGGTGAGTCCCAGTTCATTCTTTCATCAGGGACATCTGATGTTAAGTTGTGGAATGCATCTTCAATCTCGAATGGCCCCTTACATTCCTTTGATAGCTGCAAAGTTGCTCGTTTTAGCCATTCAGGAATCACATTTGCTGCTTTATCAACTGATACATCGAGTCATGAAATTCTTCTATATGATGTTCAAACCTGCAACGTTGAGTTGAGGCTTCCTGGTAGTCTAGGCCACTCATCTGTCATGGTTCGTGGCCACACACAATCTCTTTTACATTTCAGTCCACTGGACACAATGTTGCTATGGAATGGGATCTTGTGGGATAGGAGGAGCGCTGTTCCATTGCATCAGTTTGATCAATTTACTGATTTTGGTGGAGGTGGCTTTCATCCATCTGGAAATGAGGTGATATTGAACTCTGAAGTATGGGACCTGCGCAAGTTCAAGCTGCTGAGGAGCGTGCCATCTCTGGACCAGACTGTAGTGTCGTTCAACTCCGGCGGGGACGTCATCTACGCCATCCTCCGGCGTAACCTAGAAGACATAACCTCGGCCTTCAACACCCGCCGGCTCAAGCATCCGCTCTTCCCGGCGTTCCGCACAATAGACGCAACGAACTACTGCGACATCGCGACAGTCCCCGTGGACCGCTGCGTCCTCGACCTGGGCGTCGATCCCACCGACACTTACGTCGGTGTGGTTGCCATGGACGACAACGACGAAATGTACTCATCTGCCAGGCTCTACGAGATCGGAAGGCGGCGGCCCACCGACGACGATTCCGATCCTGATGATGGAGGCCAGACCGACGAGGAAGAGGAGGACGACGAGGATGAGTACGAAGCCGACGTTGATCGAATCCTGGGATCCGAGTCCGATGTTGAGGGAGAGAGCGACTCCACTAACGATTTGAGCAATGGCGATGAGGAAATCGATAGTGCCGATGAGCCTGACGAAGATGAGCTGGTGGGTATGGATGTTATGAACGAGCTCCTGGGAGGCCGGGCGTTGGCAGATAGCGATTCTGTCGAAGATGAGGATGATGACAGTGACCTGGAGTCTTATAGCAACGATGATTGATGGGAGCATTTTCTTTCTTTCTTTCTTTTTCTTAAACTATGTTTTTTCTTCAGGTTCCATGTTAGTAAGATCCGTTCAAAAAAAAAGGAGAAGACCTGGCATTAAAATGATGATGATGAGAAGGAGGAGGAGGATGGCCGATAGATAGAGATATAGGGCTGTTTTTGGTCAAACACTCGTCCAAAAAAGGAAGTATGCTTAATGTATTTGCATGCATCAAGGTAAATTTCGATTTAATGAAAAAAGAGTTATTTGCTGCTGTGCTTTTAATTTTGAAATAGTTTGAAAGTTGGTATTTGTAAATAGCCAAATTTTAGATATTGCACTTTTTGAGTTTTTTATCGTAAAAGTTTTGTAGAATGTCGTATTTGAACGTCCACTGCTTCCTTTTTATATTATTATATAAATACCTGAATTTTATGCA

Network for GWHGAAEX003148

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX003148
MEANVEPQAAVATAVQSEEAGEAPEPTTESDGTEDDKLLSAAQRLISKIIASQENPNPMLLHALASILEKQEARYMQDSASSNTARSSHIIGRLCNIVRENVEFYELISSKFLSESRYTIRIRAAAARVLLSCPSSGMYHLVFDDAVHDNLKSWVVEDNLEGSADAGDWKHDLRSHKPTDSEMLKTYATGLLAMSLAGGSQVVEDILTSGLSAKLMRYLRVRILGESNSSLKDSFQMEAKHSTVLSSTKSREENKGRYRQVLDGSRKIDEVLLGDQNSERDREKNNSVRLAHDEDCYREVSEPLRSELIASSTDVGIHDTDMEENVVADDGWHNRDHLDGRFKLVERQVARPTHEDLDESVRDDSIRRRINRGLLRSRGKGRTLESTLENERLLLSPASGLALGETTKSYKDRNICKTEDARRVCNAKKNLIRTDADLSSLEEEDVDRFQECLVGSQDISDIVKKATKAAEAEARAANAPAEAIKAAGDAAAELVRSSAFEVWKITNEEEAAVQAAFKAAATVVDAAIATKATSDGLLGLNHTRCEVEEEAEEFFILDGESLAQLREKYCILCLEILGEYVEALGPVLHEKGVDVCLELLQRCSMDGETIVNLALLPEVLKLVCALAAHKTFSALFVDRGGIQKLLAIHRTSHTFVGLSSCLFTIGSLQGVMERVCALSSHTVYQVVELALKLLECSQDLARKNAAIFFAGAFVFRAILESFDVQDGMQKILHLLRKCSEIFSSQEKAIAYHTCVALRQYIRAHLLLFVDSLRPNKSTRNVVRGTSNARASYKPLDISNEAMDVVFRQIQRDRKLGSALVRSCWPVMDKFLASNGHITMLELFQALTLEHYVQDLAPYALGVLHIVTLVPYGRKLIVNATLRNERLGMAIILDAVNGAGYIDPEVIHPALSVLVNLVCLPPSISTKPSGPVPSQQPLSTNTMNASNLEIRERHSERNMGDQIASLSVQYESRESNLLERGSETVPFSSQRSVFFKPSGFVGDRRICLGPGAGCAGLAAQLEQGYHQARQAVRSNNGIKVLLHLLQPRMITPPQAIDSIRALVCRVLLGLARDETIAHILTKLQVGKLLSELIRDLGIQASGNDQNRWQAELIQVAAELIAIVTNSERASTIAATDAAAPTLRRIERAAIAAATPITYDSRELLLLIHEHLLSSGLTATAAALQKEADLRKLPFLHQVSCQETSSLQLHWPSGRVPYGFILDANKLSVRDEDASLKPDIFQSCSRKKPLVFATNLLLEKKQVSNSLVINGFASSSKNQSAAHGALELSLSKTTSDSDADYHAKTPILLPMKRKLFELKNANITPPAAKHLAVGDLSFQASSYQTPTIERRNCLSIDGFNQSSTCNLTQQHPSVRIHTNNFPVDSSDDTHWVSQSGGAPVSPTLHKHGVSVELLPGNTERMTLDTLVVQYLKHQHRQCSAPITTLPPLSLLHPHVCPEPNCKLNAPANVTARVSSREVGTQHCGIHIGRRDHQYVHSRFRPCRTCRDDEALLTCITFLSNSNHIATGSHLGELRIFDTNKGNVLESFDGHQSPIQMVQSAFSGESQFILSSGTSDVKLWNASSISNGPLHSFDSCKVARFSHSGITFAALSTDTSSHEILLYDVQTCNVELRLPGSLGHSSVMVRGHTQSLLHFSPLDTMLLWNGILWDRRSAVPLHQFDQFTDFGGGGFHPSGNEVILNSEVWDLRKFKLLRSVPSLDQTVVSFNSGGDVIYAILRRNLEDITSAFNTRRLKHPLFPAFRTIDATNYCDIATVPVDRCVLDLGVDPTDTYVGVVAMDDNDEMYSSARLYEIGRRRPTDDDSDPDDGGQTDEEEEDDEDEYEADVDRILGSESDVEGESDSTNDLSNGDEEIDSADEPDEDELVGMDVMNELLGGRALADSDSVEDEDDDSDLESYSNDD

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	48.650
SRP064423	SRR2545915	Juvenile tuber	27.260
SRP108465	SRR5643513	five period of Gastrodia elata	18.320
	SRR5643514	five period of Gastrodia elata	17.440
	SRR5643515	five period of Gastrodia elata	17.270
	SRR5643524	five period of Gastrodia elata	16.420
	SRR5643525	five period of Gastrodia elata	17.910
	SRR5643528	five period of Gastrodia elata	18.040
	SRR5643658	five period of Gastrodia elata	17.610
	SRR5643659	five period of Gastrodia elata	18.330
	SRR5643660	five period of Gastrodia elata	19.000
	SRR5643661	five period of Gastrodia elata	17.630
	SRR5643662	five period of Gastrodia elata	17.190
	SRR5643663	five period of Gastrodia elata	18.930
	SRR5643664	five period of Gastrodia elata	18.530
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.430
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.030
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	20.210
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.850
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	23.390
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	24.460
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	22.380
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	24.010
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.250
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.610
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	19.680
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	19.680
SRP279888	Gastro	Gastrodia elata tuber	20.23
	Juven	Juvenile tuber	26.97
	Mother_Gastro	Mother tuber of Gastrodia elata	20.67
	Mother_Juven	Mother tuber of Juvenile	27.88