Detail information of GWHGAAEX003154/evm.TU.scaffold_130.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|150391208|ref|YP_001321257.1| | 2.00E-53 | 6-phosphogluconolactonase [Alkaliphilus metalliredigens QYMF] |
| KOG | KOG3147 | 2.00E-104 | 6-phosphogluconolactonase - like protein |
| nr | gi|743837589|ref|XP_010936447.1| | 9.29E-146 | PREDICTED: probable 6-phosphogluconolactonase 2 [Elaeis guineensis] |
| Swissprot | tr|Q6Z4H0|6PGL2_ORYSJ | 8.00E-133 | Probable 6-phosphogluconolactonase 2 |
| trEMBL | tr|M0TL05|M0TL05_MUSAM | 2.00E-137 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P26690_001} |
| TAIR | AT1G13700 | 2.00E-104 | 6-phosphogluconolactonase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000129 | 24050 | 32734 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003154
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01182.19 | Glucosamine_iso | 20 | 246 | 1.80E-64 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0006098 | Biological Process | pentose-phosphate shunt |
| GO:0017057 | Molecular Function | 6-phosphogluconolactonase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 20.390 |
| SRR2545915 | Juvenile tuber | 13.020 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 43.670 |
| SRR5643514 | five period of Gastrodia elata | 36.130 | |
| SRR5643515 | five period of Gastrodia elata | 30.240 | |
| SRR5643524 | five period of Gastrodia elata | 35.390 | |
| SRR5643525 | five period of Gastrodia elata | 101.260 | |
| SRR5643528 | five period of Gastrodia elata | 110.380 | |
| SRR5643658 | five period of Gastrodia elata | 250.890 | |
| SRR5643659 | five period of Gastrodia elata | 19.230 | |
| SRR5643660 | five period of Gastrodia elata | 18.060 | |
| SRR5643661 | five period of Gastrodia elata | 17.880 | |
| SRR5643662 | five period of Gastrodia elata | 19.100 | |
| SRR5643663 | five period of Gastrodia elata | 25.170 | |
| SRR5643664 | five period of Gastrodia elata | 19.380 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.830 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 31.970 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 31.200 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 38.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 22.820 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.780 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 28.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 34.500 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 24.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 33.370 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 33.370 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 28.03 |
| Juven | Juvenile tuber | 26.55 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 75.36 | |
| Mother_Juven | Mother tuber of Juvenile | 29.25 |