Detail information of GWHGAAEX003157/evm.TU.scaffold_130.8


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|262196624|ref|YP_003267833.1|1.00E-25RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
KOGKOG01181.00E-40FOG: RRM domain
nrgi|743837667|ref|XP_010936473.1|7.05E-54PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like [Elaeis guineensis]
Swissprottr|Q9FNR1|RBG3_ARATH3.00E-41Glycine-rich RNA-binding protein 3, mitochondrial (Precursor)
trEMBLtr|M0TY68|M0TY68_MUSAM6.00E-49Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P07090_001}
TAIRAT5G610301.00E-40glycine-rich RNA-binding protein 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000001299535499960+
Transcript Sequence

Network for GWHGAAEX003157

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_1341041.90E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12741HNRNPA1_3 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms67.590
SRR2545915Juvenile tuber76.090
SRP108465SRR5643513five period of Gastrodia elata247.310
SRR5643514five period of Gastrodia elata239.890
SRR5643515five period of Gastrodia elata212.110
SRR5643524five period of Gastrodia elata229.310
SRR5643525five period of Gastrodia elata116.660
SRR5643528five period of Gastrodia elata98.710
SRR5643658five period of Gastrodia elata71.280
SRR5643659five period of Gastrodia elata244.950
SRR5643660five period of Gastrodia elata264.420
SRR5643661five period of Gastrodia elata206.010
SRR5643662five period of Gastrodia elata237.380
SRR5643663five period of Gastrodia elata208.380
SRR5643664five period of Gastrodia elata218.040
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1181.200
SRR6049655Rhizomagastrodiae_C368-T10_good_1110.210
SRR6049656Rhizomagastrodiae_C368-T07_good_1230.490
SRR6049657Rhizomagastrodiae_C368-T07_good_1161.530
SRR6049658Rhizomagastrodiae_C368-T04_good_1143.750
SRR6049659Rhizomagastrodiae_C368-T04_good_1130.500
SRR6049660Rhizomagastrodiae_C368-T01_good_1185.860
SRR6049661Rhizomagastrodiae_C368-T04_good_1156.340
SRR6049662Rhizomagastrodiae_C368-T01_good_1258.860
SRR6049663Rhizomagastrodiae_C368-T01_good_1232.290
SRR6049664Rhizomagastrodiae_C368-T10_good_1301.630
SRR6049665Rhizomagastrodiae_C368-T10_good_1301.630
SRP279888GastroGastrodia elata tuber 261.66
JuvenJuvenile tuber315.83
Mother_GastroMother tuber of Gastrodia elata 87.05
Mother_JuvenMother tuber of Juvenile 145.82