Detail information of GWHGAAEX003158/evm.TU.scaffold_130.9


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|85860006|ref|YP_462208.1|4.00E-70histone deacetylase family protein [Syntrophus aciditrophicus SB]
KOGKOG13430Histone deacetylase complex, catalytic component HDA1
nrgi|743837714|ref|XP_010936484.1|0PREDICTED: histone deacetylase 5-like [Elaeis guineensis]
Swissprottr|Q8RX28|HDA5_ARATH0Histone deacetylase 5
trEMBLtr|M0SKP2|M0SKP2_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P03250_001}
TAIRAT5G610600histone deacetylase 5

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000129102415162868-
Transcript Sequence

Network for GWHGAAEX003158

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00850.18Hist_deacetyl323337.60E-89
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms21.010
SRR2545915Juvenile tuber30.160
SRP108465SRR5643513five period of Gastrodia elata27.650
SRR5643514five period of Gastrodia elata34.260
SRR5643515five period of Gastrodia elata28.160
SRR5643524five period of Gastrodia elata33.180
SRR5643525five period of Gastrodia elata15.740
SRR5643528five period of Gastrodia elata15.610
SRR5643658five period of Gastrodia elata17.360
SRR5643659five period of Gastrodia elata19.500
SRR5643660five period of Gastrodia elata16.730
SRR5643661five period of Gastrodia elata17.800
SRR5643662five period of Gastrodia elata16.180
SRR5643663five period of Gastrodia elata15.750
SRR5643664five period of Gastrodia elata16.090
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_124.720
SRR6049655Rhizomagastrodiae_C368-T10_good_116.500
SRR6049656Rhizomagastrodiae_C368-T07_good_127.990
SRR6049657Rhizomagastrodiae_C368-T07_good_124.680
SRR6049658Rhizomagastrodiae_C368-T04_good_117.920
SRR6049659Rhizomagastrodiae_C368-T04_good_117.050
SRR6049660Rhizomagastrodiae_C368-T01_good_121.970
SRR6049661Rhizomagastrodiae_C368-T04_good_118.070
SRR6049662Rhizomagastrodiae_C368-T01_good_132.950
SRR6049663Rhizomagastrodiae_C368-T01_good_125.230
SRR6049664Rhizomagastrodiae_C368-T10_good_131.980
SRR6049665Rhizomagastrodiae_C368-T10_good_131.980
SRP279888GastroGastrodia elata tuber 15.82
JuvenJuvenile tuber30.06
Mother_GastroMother tuber of Gastrodia elata 18.74
Mother_JuvenMother tuber of Juvenile 22.85