Gene detail

Detail information of GWHGAAEX003159/evm.TU.scaffold_130.10

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|300709392\|ref\|YP_003735206.1\|	2.00E-78	DEAD/DEAH box helicase domain-containing protein [Halalkalicoccus jeotgali B3]
KOG	KOG0952	0	DNA/RNA helicase MER3/SLH1, DEAD-box superfamily
nr	gi\|695054021\|ref\|XP_009415125.1\|	0	PREDICTED: activating signal cointegrator 1 complex subunit 3 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q588V7\|TEB_ARATH	2.00E-27	Helicase and polymerase-containing protein TEBICHI
trEMBL	tr\|K4C8C1\|K4C8C1_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc06g069480.2.1}
TAIR	AT5G61140	0	U5 small nuclear ribonucleoprotein helicase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000129	200178	309069	+

Transcript Sequence
>GWHTAAEX003159 CAACGAATTTCCAAGGTTCCATTTTTCCGCTCCGCCAAAAAAGCCTGTTGAGATTCTAGGGTTTTTCTCTTCAGGGAAGGAGAAGCAGGAGGGGCGCTACGAAGCGAGGTGTCAATAGGATACCGGCAAAATGTTGATGCAACTACCACGCCTGACAAACTCTATAAGAGATCCCTTCGATGTCGATCGAGCGTATCTGCAACGCAAAGAGATTCTACGGAACATCAAATCAAGAAGCTCTCGCGCTGATTTGGAACTTGCTCGGAGGCTAGTCCACCGGTGGGACGACGCTTCAAGTATTGTTCGGCAAGCTTGCAGGCAGTTTATTGGTTCTGTCTGGGAATTGACTGATGACGCTTTTGCTCCGGATGAGTTCCAGGAGGTTGCAATATTCATATATGATTTGTTTAGTATTCCTGACATTGATGTCAAGAAGAGAATATTTGAAAAAAGGGGAGAATTGCAAAAGCTTGTTGGTTACTCTATTAAGGACTCAAAGCTTCATAATACAGCTGAACTAGCTTATAGGCTTTACATGCTGCAAAATGATGATCATGAGACTAGATCTACTCCGGTTGATATTGCAGACAAACTTGGTAATGCCACAGAATTTGGATCTGATATTGCTTTCAAGACCCCAGAACGCTTTCTAGTGGACCTGCTGCCGGAAAACAGCACAACTTTGGTGGGTAATAATTTTGCTAGTGTCATACCTCATGAGGAGCAACACTTGATACATTCAAATCAAACATTGAATGCTGCAAAGGAAGTTGTGAGTTTGAAATGGCTGAAAGATGCTTGTGAAGGGATAGTTAAACAAGGAAGCTCACCACTTTCAGGAGATGACCTGGCAATGGCATTATGTCGAGTTCTATTATCTAACAAAGCAGGCGATGAGATTGCTGTTGATCTGTTGGACCTTGTTGGTGATGGCGCTTTTGAGCTAGTACAAGATCTTCTATCGCATCGAAAGGAGCTAGTAGATTCCATCCAACATGGGCTGCTTATGCTCAAGTCAGAGAAAATGGCTTCGAATGGCCACTCAAGGATGCCAAGCTATGGTACTCAAGTCATTGTGCAAACCGAATCTGAGCGTCAGATGGATAAAATAAGACGGAAAGAGGAGAAAAGACACAAAAGAGGCATGGATCATGGAGGCATTCAAGATGTTTCTGCAGAGAACTTTTCATCTTTGCTGATAGCAAGTGAAAAAAAGCATCCATTTGATGATTTGATTGGGACTGGTCAAGGCTCCAATTCATTTTCTGTGACTGCTCTTCCTCAAGGTACAACTAGGTATCATGGAAGTAATTATGAGGAAGTTAGGATTCCGCCTGTTGCAACTACACCATTAAGACCTGATGAGAGGCTGATTGAAATAAGTGAACTAGATGATTTTGCTCAAACGGCTTTTCGTGGTTATAAGTCTCTTAATCGCATACAGAGCCGAATATTCCACACAACCTATAACTCTAATGAGAATATTCTTGTTTGTGCTCCAACCGGTGCAGGCAAAACGAATATTGCAATGATTTCTATTCTTTATGAGATCAAGCGTCATTTCTGGGACGGAATTTTGCACAAGGATTTTAAGATTGTGTATGTGGCTCCAATGAAGGCCTTGGCAGCAGAGGTGACATCTACCTTCAGTCACAGGTTAGGCCCCTTAAATTTAACCGTGAAAGAACTTACAGGGGACATGCAGCTTTCTAAGCACGAGCTTGAGCAAACTCAGATGATAGTGACAACACCTGAGAAATGGGATGTGATTACTCGAAAAAGTAGTGATATGTCACTGTCAATGTTAGTAAAGCTCTTAATCATCGATGAGGTGCACCTTTTGAATGATGATAGAGGTCCTGTGATAGAAGCATTGGTTGCTCGCACGCTTCGGCAGGTTGAATCAACCCAGTCGATGATAAGGATTGTTGGATTATCTGCAACTTTGCCCAATTATATAGAGGTTGCCCAATTTTTAAGAGTCAATGCAGAAACTGGATTGTTTTTTTTCAATTCTAGTTATCGACCGGTTCCTCTAGCGCAGCAGTACATAGGAATTAGTGAGAAAGACTTTGCGAAAAGAAATGAGCTGTTCAATAAGATATGCTATGATAAGGTTCTGGAATCAGTGAAACAAGGACATCAAGCTATGGTTTTTGTTCACTCACGCAAAGACACAGGAAAAGTTGCTAGAATGATGCTTGAGTCTGCTCAATTAACTGGACATTTAGAGTTCTTTAGCAATGAAAATGATCCTCAATTTTCTTTGGTCAAGAAAGAAGTTGGCAAATCTAGAAATCGTGAGCTTGCTCAGTTGTTTGACTTTGGCTTTGGCATCCATCATGCTGGCATGCTGCGTGCTGATAGAAGCTTGACTGAGAGACTTTTTTCAGCTGGTCACCTGAAAGTTCTTGTATGTACTGCAACTTTGGCATGGGGAGTGAATCTTCCAGCACACACTGTGATTATTAAGGGGACTCAACTATATGATCCGAAAGTTGGTGGTTGGCGAGATCTTGGTATACTTGATGTTATGCAGATATTTGGACGTGCCGGTCGACCCCAGTTTGATAAAAGTGGAGAAGGCATTATAATTACATCCCATGACAAACTAGCTTATTACCTAAGATTATTGACTAGCCAACTCCCTATAGAAAGTCAGTTTATTAGCTCTTTAAAGGACAATCTTAATGCAGAAGTAGCCCTGGGCACAGTGACTAATGTCAAAGAAGCTTGTGCATGGCTTGGATATACCTATCTATTCATTAGGATGAAAACAAATCCATTGGCATATGGAGTTGCATGGGATGAGGTTATTGCTGATCCTTCCTTGACATCCAAACAAAGGTCGTTAATAGTGGATGCTGCACGTTCTCTTGACAAGGCAAAGATGATGCGGTTTGATGAGAAAAGCGGCAACTTTTATTGCACAGAACTGGGTCGCATAGCCAGTCATTTCTACCTTCAGTATTCGAGTGTCGAAACTTACAATGAAATGCTAAGACGCCACATGAGCGATAGTGAAGTTATTAATATGGTTGCTCATTCTTCTGAATTTGAAAATATTGTCGTGAGAGAAGAGGAGCAGGATGAGCTTGAAAAATTGTGCAAATTATTTTGTCCTTTAGAGGTTAAAGGCGGACCAAGTGATAAACACGGGAAAGTTTCAATTCTGATTCAGGTGCATATATCACGGGGTTCATTGGATAGCTTTTCCTTAATCTCTGATACAGCATATATTAGTGCAAGCTTAGGTCGCATTATGCGTGCTTTATTTGAAATCTGTTTGCGTCGAGGCTGGTGCGAGATGTCATTTTTAATTTTGAACTACTGTAAGGCTGTGGATCGTCAAATTTGGCCTCATCAACATCCGTTGAGACAATTTGATAAGGACATTCCATTAGAAGTGCTAAGAAAACTTGAAGAGAGGGGAGCCGATTTAGACCATCTGCTTGAGATGGAAGCAAAAGACATTGGTTTAATGATTCGTTATGTTCCAGGAGGGAAGGTGGTCAAGCAATATCTCAGTTATTTTCCAACTATTTGTTTATCTGCAAATGTTAGCCCAATTACGAGAACTGTTCTGAAGGTAGATGTACTTATAACTCCAAACTTTGTTTGGAAAGATCGCTTTAATGGTGCTTCTGAACGTTGGTGGTTTACTGTTGAGGATTCTGAAAATGATCACATCTATCATTCAGAGCTCTTCACATTAACTAAGAAGATGGCAGGAGTAGAATCTCAGAAGATCTCCTTTACTGTACCGATATTTGAGCCTCATCCACCACAATACTACATTCGTGCAGTTTCTGATTCTTGGTTACACGCTGAATCAATTTATACTGTATCTTTTAATAATTTGACATTACCAGAGACACAAATATCACATACGGAACTTCTAGATCTGAAACCCCTTCCCGTGAGCTCTCTTTGCAATCAAACTTATGAGAAGCTATACAAATTTTCACATTTCAATCCAATCCAAACACAGGCATTTCATGTTCTTTACCACACAAACGACAATGTGCTATTGGGAGCGCCAACAGGAAGTGGAAAAACAATATCAGCTGAGCTGGCAATGCTGCATCTTTTCAACACTCAGCCTGATATGAAGGTAGTTTACATTGCACCACTTAAAGCTTTAGTTCGAGAAAGAATGATTGACTGGAGAAAGCGGCTAGTTTCTCAGCTCGGAAAGAAGATGGTTGAGATGACTGGAGATTTTACTCCTGATATTAATGCACTGTTATCTGCTGATATCATTATTTCTACTCCTGAAAAATGGGATGGAATTAGCCGGAATTGGCTTAGCCGTGCTTATGTAATGCAGGTGGGACTCATGATATTGGATGAGATTCATTTGCTTGGGGCTGACCGTGGGCCAATTCTCGAGGTCATTGTTTCAAGGATGCGGTATATATCGTCTCAAACTGAACTTTTCATTCGTTTCATTGGACTTTCAACGGCTCTTGCTAATGCACGTGATTTGGCTAATTGGCTTGGTGTTGAGGAGGTTGGTCTATTCAATTTCAAACCTAGTGTCAGACCAGTGCCACTTGAAGTACATATCCAGGGCTTTCCAGGGAAATTTTACTGCCCAAGGATGAATAGCATGAATAAACCTGCATATGCTGCGATTTGTACCCATTCCCCTTCAAAGCCTGTTCTTATTTTTGTTTCATCTCGGCGTCAAACTAGGCTTACTGCTTTGGATCTCATTCAGCTTGCAACTGCAGATGAGAATCCAAGGCAATTTTTGAAGATGCCTGAAGATGAAGTAGAGATGGTCCTTTCACAAGTTGCTGACAGTAATTTGAGACATACTTTGCAGTTTGGAATTGGACTTCACCACGCAGGTTTAAATGACAAGGATAGATCTTTAGTTGAGGAACTATTTGCAAACAATAGAATTCAGGTATTAGTATGCACTAGCACACTAGCTTGGGGAGTTAACCTTCCTGCTCATCTTGTTATAATTAAGGGAACTGAATTTTATGATGGAAAAATGAAGAGATATGTTGACTTCCCAATAACGGATATATTGCAAATGATGGGTCGTGCAGGCCGTCCACAGTTTGACCAGCATGGGAAGGCTGTTATTCTTGTTCATGAACCAAAAAAGAGCTTTTATAAGAAGTTTCTTTATGAGCCATTCCCAGTTGAAAGTAATCTAAGAGAACATCTACATGATCACATTAATGCAGAAGTTGTTACTGGCACAATTAGCGATAAAGAGGATGCCGTTCATTATTTAACGTGGACCTATCTGTTTTGTCGGATGGTTATTAATCCATCTTACTATGGCTTAGAAGATACAGATAGCAAGACTATAAATGCTTTTCTGTCAAGGCTAGTTGAAAATACATTTGAAGACCTAGAAGACAGTGGATGTATCGAGGTAAATGAAAATAGTGTTGAGCCAATGATACTGGGTTCAATAGCTTCTCAATATTACCTCAGTTACTTGACTGTATCAATGTTCGGCTCAAATATTGGACCAAATACTTCATTAGAGGTTTTTCTTCATATACTTTCTGGTGCTGCTGAATATGATGAACTTCCTGTGAGGCACAATGAGGAAATCCTAAATGAAACATTATCTACAAGGGTTCTGTATATGGTTGATGAACAGAATCTTGATGATCCACACGTTAAAGCAAATTTGCTATTTCAGGCACACTTTTCACGCATAGAAATGCCAATCAGTGACTATGTAACTGATTTAAAATCAGTTCTTGATCAAAGCATACGCATAATACAGGCTATGATTGACATATCTGCTAATAGTGGATGGCTATCAAGCGCCTTGAACTGCATGCATCTTCTTCAAATGGTCATGCAGGGTTTATGGCATGAACGCGATTCATCTCTATGGATGCTTCCAAGCTTGACTGTTGATGTTCTAAATCTTCTGAACAAACATGGTATATTTTCCATGCAAGAGCTATTTGAGCTTCCAAATTTCAAGTTTGAACCGATACTTGGGAAAAATTGTGCTTCAAAAATATGCCAGGAACTTTTTAATTTTCCTCGTGTTAAGTTGAAAGTAAAACTGCATGAGAATGAGTTTCAAGATTCAAAAGCTGGAACTCTTAATATCAGGTTAGAGAAGACAAATTCTAAGCACTCATCATCAAGAGCATTTGTTCCCAGATTTCCAAAGGTAAAAGATGAGGCCTGGTGGGTGGTTCTGGGAAATATGACCACCTCGGAACTCTATGCCTTGAAGAGAGTTTGTATTTCTGACCGCATTGTCACCACTCGCTTGGAGTTGCCTTCAACACCAATCAATTTTCAGGAAACGAAGGTTCTTTTGGTCTCTGATTGTTACCTTGGACTCGATCAAGAGCATTCACTCCAGTGAACGAATGCATGATATTTCATCAGGAAACGGTGCAATATTTTTCCTTTTCTTTTATCAAATTTTGTATAAAAGAGATTCAGTCCATGAAATTTATTGTTTTAAAGTCAGCCTAAGTAAATGCTCAGGCCTAATTAGTATGATAATTAAATATTCTAAAATGACATCATTTATGTCAATTTAAACACGACTATGATTAGTTGCTGGGTTAGTAAAATCTGTAAAAATTGGGCTTTTGGAAATATATTGAATATTCTCCGTGAGGCAT

Network for GWHGAAEX003159

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	436	609	5.30E-26
PF00271.30	Helicase_C	660	810	3.70E-07
PF02889.15	Sec63	933	1239	3.90E-82
PF00270.28	DEAD	1283	1448	2.10E-20
PF00271.30	Helicase_C	1561	1646	1.00E-07
PF02889.15	Sec63	1765	2076	2.30E-69

Protein Sequence

>GWHPAAEX003159
MLMQLPRLTNSIRDPFDVDRAYLQRKEILRNIKSRSSRADLELARRLVHRWDDASSIVRQACRQFIGSVWELTDDAFAPDEFQEVAIFIYDLFSIPDIDVKKRIFEKRGELQKLVGYSIKDSKLHNTAELAYRLYMLQNDDHETRSTPVDIADKLGNATEFGSDIAFKTPERFLVDLLPENSTTLVGNNFASVIPHEEQHLIHSNQTLNAAKEVVSLKWLKDACEGIVKQGSSPLSGDDLAMALCRVLLSNKAGDEIAVDLLDLVGDGAFELVQDLLSHRKELVDSIQHGLLMLKSEKMASNGHSRMPSYGTQVIVQTESERQMDKIRRKEEKRHKRGMDHGGIQDVSAENFSSLLIASEKKHPFDDLIGTGQGSNSFSVTALPQGTTRYHGSNYEEVRIPPVATTPLRPDERLIEISELDDFAQTAFRGYKSLNRIQSRIFHTTYNSNENILVCAPTGAGKTNIAMISILYEIKRHFWDGILHKDFKIVYVAPMKALAAEVTSTFSHRLGPLNLTVKELTGDMQLSKHELEQTQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESTQSMIRIVGLSATLPNYIEVAQFLRVNAETGLFFFNSSYRPVPLAQQYIGISEKDFAKRNELFNKICYDKVLESVKQGHQAMVFVHSRKDTGKVARMMLESAQLTGHLEFFSNENDPQFSLVKKEVGKSRNRELAQLFDFGFGIHHAGMLRADRSLTERLFSAGHLKVLVCTATLAWGVNLPAHTVIIKGTQLYDPKVGGWRDLGILDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMKTNPLAYGVAWDEVIADPSLTSKQRSLIVDAARSLDKAKMMRFDEKSGNFYCTELGRIASHFYLQYSSVETYNEMLRRHMSDSEVINMVAHSSEFENIVVREEEQDELEKLCKLFCPLEVKGGPSDKHGKVSILIQVHISRGSLDSFSLISDTAYISASLGRIMRALFEICLRRGWCEMSFLILNYCKAVDRQIWPHQHPLRQFDKDIPLEVLRKLEERGADLDHLLEMEAKDIGLMIRYVPGGKVVKQYLSYFPTICLSANVSPITRTVLKVDVLITPNFVWKDRFNGASERWWFTVEDSENDHIYHSELFTLTKKMAGVESQKISFTVPIFEPHPPQYYIRAVSDSWLHAESIYTVSFNNLTLPETQISHTELLDLKPLPVSSLCNQTYEKLYKFSHFNPIQTQAFHVLYHTNDNVLLGAPTGSGKTISAELAMLHLFNTQPDMKVVYIAPLKALVRERMIDWRKRLVSQLGKKMVEMTGDFTPDINALLSADIIISTPEKWDGISRNWLSRAYVMQVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTELFIRFIGLSTALANARDLANWLGVEEVGLFNFKPSVRPVPLEVHIQGFPGKFYCPRMNSMNKPAYAAICTHSPSKPVLIFVSSRRQTRLTALDLIQLATADENPRQFLKMPEDEVEMVLSQVADSNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNRIQVLVCTSTLAWGVNLPAHLVIIKGTEFYDGKMKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESNLREHLHDHINAEVVTGTISDKEDAVHYLTWTYLFCRMVINPSYYGLEDTDSKTINAFLSRLVENTFEDLEDSGCIEVNENSVEPMILGSIASQYYLSYLTVSMFGSNIGPNTSLEVFLHILSGAAEYDELPVRHNEEILNETLSTRVLYMVDEQNLDDPHVKANLLFQAHFSRIEMPISDYVTDLKSVLDQSIRIIQAMIDISANSGWLSSALNCMHLLQMVMQGLWHERDSSLWMLPSLTVDVLNLLNKHGIFSMQELFELPNFKFEPILGKNCASKICQELFNFPRVKLKVKLHENEFQDSKAGTLNIRLEKTNSKHSSSRAFVPRFPKVKDEAWWVVLGNMTTSELYALKRVCISDRIVTTRLELPSTPINFQETKVLLVSDCYLGLDQEHSLQ

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.010
SRP064423	SRR2545915	Juvenile tuber	28.150
SRP108465	SRR5643513	five period of Gastrodia elata	9.050
	SRR5643514	five period of Gastrodia elata	10.850
	SRR5643515	five period of Gastrodia elata	9.330
	SRR5643524	five period of Gastrodia elata	9.220
	SRR5643525	five period of Gastrodia elata	6.720
	SRR5643528	five period of Gastrodia elata	4.670
	SRR5643658	five period of Gastrodia elata	6.810
	SRR5643659	five period of Gastrodia elata	13.630
	SRR5643660	five period of Gastrodia elata	17.610
	SRR5643661	five period of Gastrodia elata	15.760
	SRR5643662	five period of Gastrodia elata	13.070
	SRR5643663	five period of Gastrodia elata	14.730
	SRR5643664	five period of Gastrodia elata	14.670
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.550
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.860
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.980
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.670
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.690
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.730
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.140
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.310
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.330
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.300
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.080
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.080
SRP279888	Gastro	Gastrodia elata tuber	17.88
	Juven	Juvenile tuber	22.91
	Mother_Gastro	Mother tuber of Gastrodia elata	10.08
	Mother_Juven	Mother tuber of Juvenile	13.95