Detail information of GWHGAAEX003161/evm.TU.scaffold_130.12


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG23960HAT (Half-A-TPR) repeat-containing protein
nrgi|743758952|ref|XP_010929598.1|0PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Elaeis guineensis]
trEMBLtr|A0A061GH63|A0A061GH63_THECC0HAT helix, U3 small nucleolar RNA-associated protein 6 {ECO:0000313|EMBL:EOY28738.1}
TAIRAT4G282000Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000129315205331533-
Transcript Sequence

Network for GWHGAAEX003161

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08640.10U3_assoc_69821.50E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14557UTP6 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0006396Biological ProcessRNA processing
GO:0000462Biological Processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515Molecular Functionprotein binding
GO:0030515Molecular FunctionsnoRNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms9.420
SRR2545915Juvenile tuber11.480
SRP108465SRR5643513five period of Gastrodia elata13.850
SRR5643514five period of Gastrodia elata13.060
SRR5643515five period of Gastrodia elata13.910
SRR5643524five period of Gastrodia elata11.970
SRR5643525five period of Gastrodia elata9.450
SRR5643528five period of Gastrodia elata10.980
SRR5643658five period of Gastrodia elata8.880
SRR5643659five period of Gastrodia elata16.690
SRR5643660five period of Gastrodia elata15.630
SRR5643661five period of Gastrodia elata14.090
SRR5643662five period of Gastrodia elata12.840
SRR5643663five period of Gastrodia elata13.570
SRR5643664five period of Gastrodia elata12.350
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.730
SRR6049655Rhizomagastrodiae_C368-T10_good_116.430
SRR6049656Rhizomagastrodiae_C368-T07_good_115.930
SRR6049657Rhizomagastrodiae_C368-T07_good_111.630
SRR6049658Rhizomagastrodiae_C368-T04_good_111.910
SRR6049659Rhizomagastrodiae_C368-T04_good_112.430
SRR6049660Rhizomagastrodiae_C368-T01_good_115.360
SRR6049661Rhizomagastrodiae_C368-T04_good_111.720
SRR6049662Rhizomagastrodiae_C368-T01_good_117.000
SRR6049663Rhizomagastrodiae_C368-T01_good_116.330
SRR6049664Rhizomagastrodiae_C368-T10_good_118.620
SRR6049665Rhizomagastrodiae_C368-T10_good_118.620
SRP279888GastroGastrodia elata tuber 13.79
JuvenJuvenile tuber16.56
Mother_GastroMother tuber of Gastrodia elata 12.95
Mother_JuvenMother tuber of Juvenile 19.17