Detail information of GWHGAAEX003162/evm.TU.scaffold_130.13


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41970FOG: PPR repeat
nrgi|743837159|ref|XP_010936319.1|0PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Elaeis guineensis]
Swissprottr|Q9FZD1|PPR58_ARATH0Pentatricopeptide repeat-containing protein At1g26460, mitochondrial (Precursor)
trEMBLtr|M0RZL4|M0RZL4_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P13560_001}
TAIRAT1G264600Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000129332636351467-
Transcript Sequence

Network for GWHGAAEX003162

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13812.5PPR_31602174.20E-05
PF13041.5PPR_24825281.40E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms12.650
SRR2545915Juvenile tuber13.430
SRP108465SRR5643513five period of Gastrodia elata14.070
SRR5643514five period of Gastrodia elata15.980
SRR5643515five period of Gastrodia elata12.990
SRR5643524five period of Gastrodia elata15.480
SRR5643525five period of Gastrodia elata9.620
SRR5643528five period of Gastrodia elata7.980
SRR5643658five period of Gastrodia elata7.060
SRR5643659five period of Gastrodia elata17.240
SRR5643660five period of Gastrodia elata17.300
SRR5643661five period of Gastrodia elata16.380
SRR5643662five period of Gastrodia elata14.490
SRR5643663five period of Gastrodia elata14.500
SRR5643664five period of Gastrodia elata14.460
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.000
SRR6049655Rhizomagastrodiae_C368-T10_good_118.720
SRR6049656Rhizomagastrodiae_C368-T07_good_119.130
SRR6049657Rhizomagastrodiae_C368-T07_good_115.540
SRR6049658Rhizomagastrodiae_C368-T04_good_115.290
SRR6049659Rhizomagastrodiae_C368-T04_good_115.080
SRR6049660Rhizomagastrodiae_C368-T01_good_117.550
SRR6049661Rhizomagastrodiae_C368-T04_good_117.890
SRR6049662Rhizomagastrodiae_C368-T01_good_124.300
SRR6049663Rhizomagastrodiae_C368-T01_good_119.960
SRR6049664Rhizomagastrodiae_C368-T10_good_119.980
SRR6049665Rhizomagastrodiae_C368-T10_good_119.980
SRP279888GastroGastrodia elata tuber 16.83
JuvenJuvenile tuber13.58
Mother_GastroMother tuber of Gastrodia elata 13.17
Mother_JuvenMother tuber of Juvenile 11.12