Gene detail

Detail information of GWHGAAEX003164/evm.TU.scaffold_130.18

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672111908\|ref\|XP_008803078.1\|	8.62E-109	PREDICTED: F-box protein At5g39250-like [Phoenix dactylifera]
Swissprot	tr\|Q9FL82\|FB270_ARATH	3.00E-90	F-box protein At5g39250
trEMBL	tr\|A0A022RUJ4\|A0A022RUJ4_ERYGU	1.00E-100	Uncharacterized protein {ECO:0000313\|EMBL:EYU44182.1}
TAIR	AT5G39250	9.00E-90	F-box family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000129	418854	437434	+

Transcript Sequence
>GWHTAAEX003164 ATAAACATTAAGAACTGAGTAAAGATTTGGGCCGTCATTTTTGCCCTTAGCAGTCAGAAATCGCAACTCTATCTCGTCCCTTCGTATCTGCACTCCGTCGCTGTCGAAGATCCGCCCAGCCATGGTTGACAGTCGCGACCGTAACGTCCAGCCCTGAACCCTAGGCGCCATGTTTTGCTGTGCTTGACATCAATCTCCATTCTCTCCTCCTAGCTTCAGAAATTCGATTCGAACTAAGAAAAGAAAAGAAAAGAGAACTTGAATAATGAGCGGCGGAGGAGAATGCCAGTCGTACGGAGAGGTGCTGAAGGCGGTGCTTCCTCTGCTGGACGGTGAGGATCTAGCATCCTGCATGCTGGTGTCCCGTCAATGGAGGGAGATTGCGGGGGACGAATACTTCTGGAAGTGCGTCTGCGACAGGCGGTGGCCGTCCGTCTGCAAGAGGCCGCCGCACGCTCTGATGAGCTACCGCAGGCTGTATCAGTGCTTCTCCAAACCCCCTCCACCACAGCCCCTCCTCCCCCCACAGATATCCTTTCAGGACTTAGATTTCTACATTGATCTCTGGTCCGATGGCCGCCTCATCTTCTCAGAACCTGTCTCCGGCTCAAGCATCCGGGCCGGAGGGATCAGAAATCGCCCCAAGGCCATCCCTGACATCCTCGCCTCCCACCTCGATGATCCCAGCTACAAGATGATAGTCCAGGTGGAACCCAGCTTCGCCCTCCCCATATGGCAGCAGCGAGTCGCCGCTTCCGTCCTGGCCGCTCGGCGGGACACGGGAAAGATGGCCTGCATCCTCAACAGCGCCCTGTTCGATTACGTCGACCGGAGCGCGTCCAGGGCGCTGGCGTACGACTACCTCAGCTTCTCCCCCTTCCACCCTTTCGTCTCTGGAATCAGAGCATGGGCTTCCCTGCTTTTCCTGGCCGCCGCCGGCGAGGAAGACGCCGTCCACGTCTTTGGCATCGAGATCGATTTCTGCGACGCCGCTAGCTCCGAGGAGGAGGTCCTCTGGCTCCTGGACATGCTTGATTGGAAATAACAATCTAAATTATAAACATAAAAGACATATCTTCTTCTTCTTACTGCTGTTGATGCTTAATTTGTACATAGTGAACCCTCCTAAGCCCTTGTATGTGTATTTCTATGCGTTCAAGTGCTTAATAAGAAAGCCTGTGAGGTTAAAGTGGTTTAAACATTATTAATTTTGTTTGTCTTAGTTTTTTATTGTGTAGTGTGTTTTAATGTGCTGTTAAGAACAAAGCTTAAAGTTTGTTTTCTCACATCTCGTTTATGTCTTCAAAAAAATTATTCTATGATATAGGCATGAGCTCACATTTCAAAGCTTCTTATACTACCTTTCGAAATAGTTTTTAGTTAAATCATTATTTTATAATGTTGTGCTTTGATATGTATCAGTTGCTTTTTTAATGTGCTATTATGAGGCCACGATGGATAATGATTCCCCACATCTTGTGTTGGTAGTTTTTTCTACTTGATTTTTGTCAGATGAACAAATAATGTTGTCATTGGTTTTCTAAGCTTACCTCGAATGTGACGTTGAATCTAAAGTCTCAGCTTAATTTTTAATCATAGCTTTTCTTTCGCATTTATGATTAGCTCTCAGCTAGCTTTTATATTTGGTAATTCTTTATGTTATTGACATTTAATTCCTTCAATTATTTGGGCCAAAGCCCTCACACGCCCCAAAAAAAAAATATTACACCCTCAAGCAAATGTATAAATTATTTGACAATGAATATTTTTTTGTTTTTTCTCACGCCTTTATTCCATTTAGACTCTCAGCAGATCATGACTCACATCTTACTATTTAACACAATATTTAAATTAGTTATAAAGCTCTTTGCTTCAAGATTGAAACTGCATTTGCCTCATAGTATTGACTCAGCCCAAATTGCTTTCATCCCAGGAAAGGTTATCACTGAAAATAAGTTATTGGATGCTGAAATTATGCATACTTTTAATAGCACTAAAGGCAAATAATTTTGTGCTAAATTAGACATTCGAAAGGCATTTGACACTATTAATAGAAATTTTATTCTGGAATGCATGAAGTTATAAGACTTTCCTCATTACATAAATTGTATGGTAGCTTGCATTAATAACACCCATTACTCTATTATGATTAACAAAAGCATGAAGGGTTACATTCCTTCTACTAATGGCATCAGGCAAAGGTGTCCACCTTCCCCTACTTATTTACAATTACGATGGAGGTCTGTTTGCTCTCTCTAATTAAGTCGTAACTAAAGGCAGTCTTACCATATAAAAATAACAATTTTATTTGTTCCCATATATTTTTTGCGAATGATTTGCTTAGTTTTGGTGTTGCCTCTGAGGAGAATATTGTTGCTTTTCTTAAGATGTTAGAGGATTACAAGCATTGTTCATGCCTTCAAATTAACATTGATAAATCTGAGATAATTTTTTTCAAAGATGTCTCTAATTTATCAGTTTTGATGGAGATGTCCATCCTTCACTGTCTGCAATTACCTCTCATATATTTGGGGCTGTCCATAACAAAATTCAGATTAAAAGTTTCAAACTTCACTCATCTTTTGGAGAAATCAAATTTTGACTTAAGAATTGGAGTAAAAAACTAATCTTTTGTAGGGAGGCTTCAATTATTTAAATTATTGTTTTGAAACTTACTCACATATTGAGCCAAAGATATGCATATTCCTACAGCTATTATCAATAAAATTAACACCTATGCTTGGCATTTTCTCTATGATGGGGAATTAGACAAGAGGAAATTTACATAATATCTTGGGTTAAAATG

Network for GWHGAAEX003164

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.6	F-box-like	12	51	1.10E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.890
SRP064423	SRR2545915	Juvenile tuber	4.630
SRP108465	SRR5643513	five period of Gastrodia elata	11.980
	SRR5643514	five period of Gastrodia elata	11.350
	SRR5643515	five period of Gastrodia elata	11.450
	SRR5643524	five period of Gastrodia elata	11.500
	SRR5643525	five period of Gastrodia elata	17.180
	SRR5643528	five period of Gastrodia elata	13.550
	SRR5643658	five period of Gastrodia elata	18.230
	SRR5643659	five period of Gastrodia elata	11.880
	SRR5643660	five period of Gastrodia elata	14.550
	SRR5643661	five period of Gastrodia elata	15.140
	SRR5643662	five period of Gastrodia elata	14.720
	SRR5643663	five period of Gastrodia elata	11.760
	SRR5643664	five period of Gastrodia elata	17.030
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.590
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.190
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.450
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.690
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.660
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.600
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.960
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.390
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.770
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.770
SRP279888	Gastro	Gastrodia elata tuber	16.10
	Juven	Juvenile tuber	18.23
	Mother_Gastro	Mother tuber of Gastrodia elata	18.75
	Mother_Juven	Mother tuber of Juvenile	17.17