Detail information of GWHGAAEX003166/evm.TU.scaffold_130.20


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|322434419|ref|YP_004216631.1|8.00E-20HNH endonuclease [Granulicella tundricola MP5ACTX9]
KOGKOG10000Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily
nrgi|672138024|ref|XP_008792754.1|0PREDICTED: DNA annealing helicase and endonuclease ZRANB3 [Phoenix dactylifera]
Swissprottr|Q7G8Y3|ISW2_ORYSJ6.00E-17Probable chromatin-remodeling complex ATPase chain
trEMBLtr|W1NX14|W1NX14_AMBTC0Uncharacterized protein {ECO:0000313|EMBL:ERM99888.1}
TAIRAT5G078100SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000129441156474014-
Transcript Sequence

Network for GWHGAAEX003166

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00271.30Helicase_C1592543.60E-12
PF01844.22HNH7097445.40E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding
GO:0004519Molecular Functionendonuclease activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.090
SRR2545915Juvenile tuber11.520
SRP108465SRR5643513five period of Gastrodia elata12.020
SRR5643514five period of Gastrodia elata12.230
SRR5643515five period of Gastrodia elata11.420
SRR5643524five period of Gastrodia elata13.400
SRR5643525five period of Gastrodia elata26.520
SRR5643528five period of Gastrodia elata14.510
SRR5643658five period of Gastrodia elata20.190
SRR5643659five period of Gastrodia elata30.100
SRR5643660five period of Gastrodia elata37.760
SRR5643661five period of Gastrodia elata49.300
SRR5643662five period of Gastrodia elata35.160
SRR5643663five period of Gastrodia elata45.230
SRR5643664five period of Gastrodia elata37.570
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.320
SRR6049655Rhizomagastrodiae_C368-T10_good_110.220
SRR6049656Rhizomagastrodiae_C368-T07_good_114.860
SRR6049657Rhizomagastrodiae_C368-T07_good_120.240
SRR6049658Rhizomagastrodiae_C368-T04_good_123.930
SRR6049659Rhizomagastrodiae_C368-T04_good_125.820
SRR6049660Rhizomagastrodiae_C368-T01_good_115.470
SRR6049661Rhizomagastrodiae_C368-T04_good_119.230
SRR6049662Rhizomagastrodiae_C368-T01_good_115.120
SRR6049663Rhizomagastrodiae_C368-T01_good_117.810
SRR6049664Rhizomagastrodiae_C368-T10_good_110.550
SRR6049665Rhizomagastrodiae_C368-T10_good_110.550
SRP279888GastroGastrodia elata tuber 82.97
JuvenJuvenile tuber49.13
Mother_GastroMother tuber of Gastrodia elata 45.29
Mother_JuvenMother tuber of Juvenile 38.77