Detail information of GWHGAAEX003167/evm.TU.scaffold_130.21


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|218666513|ref|YP_002425806.1|1.00E-18helicase, SNF2/RAD54 family [Acidithiobacillus ferrooxidans ATCC 23270]
KOGKOG10003.00E-96Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily
nrgi|695046539|ref|XP_009411103.1|4.14E-112PREDICTED: DNA annealing helicase and endonuclease ZRANB3 isoform X2 [Musa acuminata subsp. malaccensis]
Swissprottr|Q9ZUL5|CHR19_ARATH3.00E-17Protein CHROMATIN REMODELING 19 {ECO:0000303|PubMed:16547115}
trEMBLtr|M0TKY9|M0TKY9_MUSAM1.00E-106Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P26530_001}
TAIRAT5G078103.00E-96SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000129475899519894-
Transcript Sequence

Network for GWHGAAEX003167

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00176.22SNF2_N1132511.80E-20
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySNF2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005524Molecular FunctionATP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.790
SRR2545915Juvenile tuber8.970
SRP108465SRR5643513five period of Gastrodia elata9.500
SRR5643514five period of Gastrodia elata10.420
SRR5643515five period of Gastrodia elata10.280
SRR5643524five period of Gastrodia elata13.180
SRR5643525five period of Gastrodia elata26.280
SRR5643528five period of Gastrodia elata11.180
SRR5643658five period of Gastrodia elata17.550
SRR5643659five period of Gastrodia elata29.830
SRR5643660five period of Gastrodia elata41.250
SRR5643661five period of Gastrodia elata44.520
SRR5643662five period of Gastrodia elata32.780
SRR5643663five period of Gastrodia elata46.380
SRR5643664five period of Gastrodia elata38.630
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.360
SRR6049655Rhizomagastrodiae_C368-T10_good_111.980
SRR6049656Rhizomagastrodiae_C368-T07_good_115.500
SRR6049657Rhizomagastrodiae_C368-T07_good_117.850
SRR6049658Rhizomagastrodiae_C368-T04_good_119.790
SRR6049659Rhizomagastrodiae_C368-T04_good_124.780
SRR6049660Rhizomagastrodiae_C368-T01_good_116.920
SRR6049661Rhizomagastrodiae_C368-T04_good_121.160
SRR6049662Rhizomagastrodiae_C368-T01_good_112.220
SRR6049663Rhizomagastrodiae_C368-T01_good_120.970
SRR6049664Rhizomagastrodiae_C368-T10_good_19.160
SRR6049665Rhizomagastrodiae_C368-T10_good_19.160
SRP279888GastroGastrodia elata tuber 74.28
JuvenJuvenile tuber52.05
Mother_GastroMother tuber of Gastrodia elata 34.98
Mother_JuvenMother tuber of Juvenile 36.87