Detail information of GWHGAAEX003168/evm.TU.scaffold_130.22
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2042 | 0 | Ubiquitin fusion degradation protein-2 |
| nr | gi|743865889|ref|XP_010904932.1| | 0 | PREDICTED: probable ubiquitin conjugation factor E4 [Elaeis guineensis] |
| Swissprot | tr|Q9LF41|UBE4_ARATH | 0 | Probable ubiquitin conjugation factor E4 |
| trEMBL | tr|M0RHE3|M0RHE3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P11670_001} |
| TAIR | AT5G15400 | 0 | U-box domain-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000129 | 557161 | 571274 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003168
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF10408.8 | Ufd2P_core | 255 | 916 | 5.40E-199 |
| PF04564.14 | U-box | 933 | 1003 | 2.70E-30 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10597 | UBE4B, UFD2 | Protein processing in endoplasmic reticulum | map04141 |
| Ubiquitin mediated proteolysis | map04120 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016567 | Biological Process | protein ubiquitination |
| GO:0006511 | Biological Process | ubiquitin-dependent protein catabolic process |
| GO:0034450 | Molecular Function | ubiquitin-ubiquitin ligase activity |
| GO:0004842 | Molecular Function | ubiquitin-protein transferase activity |
| GO:0000151 | Cellular Component | ubiquitin ligase complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 34.950 |
| SRR2545915 | Juvenile tuber | 34.060 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 26.160 |
| SRR5643514 | five period of Gastrodia elata | 26.610 | |
| SRR5643515 | five period of Gastrodia elata | 29.460 | |
| SRR5643524 | five period of Gastrodia elata | 29.640 | |
| SRR5643525 | five period of Gastrodia elata | 26.280 | |
| SRR5643528 | five period of Gastrodia elata | 24.860 | |
| SRR5643658 | five period of Gastrodia elata | 27.830 | |
| SRR5643659 | five period of Gastrodia elata | 30.850 | |
| SRR5643660 | five period of Gastrodia elata | 33.600 | |
| SRR5643661 | five period of Gastrodia elata | 28.630 | |
| SRR5643662 | five period of Gastrodia elata | 30.200 | |
| SRR5643663 | five period of Gastrodia elata | 30.010 | |
| SRR5643664 | five period of Gastrodia elata | 29.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 26.290 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 31.170 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 34.140 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 38.060 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 41.100 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 35.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 36.520 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 31.300 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 36.090 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 25.990 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 25.990 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 38.61 |
| Juven | Juvenile tuber | 52.36 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 36.82 | |
| Mother_Juven | Mother tuber of Juvenile | 53.28 |