Gene detail

Detail information of GWHGAAEX003171/evm.TU.scaffold_130.25

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|294506881\|ref\|YP_003570939.1\|	4.00E-10	23S rRNA (guanosine-2'-O-)-methyltransferase [Salinibacter ruber M8]
KOG	KOG1906	0	DNA polymerase sigma
nr	gi\|672110192\|ref\|XP_008794020.1\|	0	PREDICTED: uncharacterized protein LOC103710172 isoform X1 [Phoenix dactylifera]
trEMBL	tr\|M5X6E6\|M5X6E6_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ21504.1}
TAIR	AT3G61690	0	nucleotidyltransferases

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000129	583025	624735	-

Transcript Sequence
>GWHTAAEX003171 ATGTTAGATGTTGTGATTGAAGTTGATATATTGAAAAGTGGGTTGAAAGGCAAGGTGAAACGGCAAAGTTTAGGTGATCTGCAGCTGCCTTATATGGGCGAGAATGAAGTCTGGGCGAAGCCAGGTGGCCTTCTACTCAATGGCCTTCTGCCGAATGAAATCAGCTGTGTTACTAGGGTTCTTGATGCCGAGCGGTGGGCTAAGGCTGAAGCAAGAACAACCGATCTGCTTGCTTATATACAACCTAACAGACCATCGGAGGAACGAAGAAATGCTGTGGCAAACTATGTTCAAAGGCTAATTATGAAGTGTTTCTCCTGTGAGGTTTTCACATTTGGGTCTGTACCTTTGAAAACTTATTTACCTGATGGTGACATTGATTTGACTACATTTAGTAAGAATGATGATTTGAGAGATACTTGGGCCAATGATGTACGTGAGGTGCTTGAGAATGAAGAAAGAAATGAAAGTGCTGAATTTCGTGTTAAGGAAGTTCAGTACATTCAAGCCGAGGTTAAGATTATCAAGTGTCTTGTAGAAAATATAGTTGTAGATATATCTTTCAATCAAGTTGGTGGGCTATGTACTCTGTGTTTCCTTGAAGAGATTGATCATCTGATAAGTCAAAATCACTTATTTAAGAGGAGTATCATATTGATTAAAGCTTGGTGTTACTATGAGAGCCGGATACTTGGTGCTCATCATGGGCTTATTTCAACATATGCTTTAGAGACTTTAGTTCTTTACATATTTCATGTTTTTAACAATTCCTTTACTGGACCGCTTGAGGTTCTATATCGTTTTCTAGAATTTTTTAGTCATTTTGACTGGGACAACTTTTGTGTTAGCCTTTGGGGACCAGTCCCAATTAGCACACTTCCTGACATGGCAGCGGAATCTCCTCGAAAGGATGGTGGTGATTTGCTGCTTAGTGGTGTTTTCCTTGAGGCTTGTAGTTCTGTGTATGCTGTTTTTCCAGGTGGTCAAGAAAATCATGGGCAACAGTTTACGTCCAAACATTTCAATGTGATTGATCCTTTACGTACAAACAACAATCTTGGACGAAGTGTCAGTAAAGGCAATTTTTATAGGATACGCAGTGCATTTGCATTTGGAGCCAATAGGTTAGCTAGATTACTTGATTGTCCAAAAGAAGATGTTATTGCTGAAGTCAACAAGTTCTTTATGAACACGTGGGAGAGACATGGTACTGGTAATAGACCCGATATCTCTTTCCCGGCCAATCTGTCTATGACATCCTTAAATATTGAATCAGTTGAGGTGTCTAATTCTTCAAGAGGAACAGCTAGCCTACTGAAAAGTACTGGAAGTATTGGACCGCAGGTTGGTCTTGAGCCTGTGCCTAAAGGAAACCTTGCTTCGCATAATTCTATTTCTCAAGCTATTAACACGACCACGCAACGCCCTCCAAATGCTTTCAGGACAAGCAATTCTGCCTTTGTGTCTCGTTCTCCACGACAGAAGGGCTATGCGAATCAAATTAGTCCAAGAGAGACTGATCATTTTGAAAGAAATATCGGCACAGTTATGCCGGCTAAATATGCGAAGAATCAGAAAAATCTTAGACCCAATTATACTGACTTGGAAAAGCATGGTAGTTTTCAATTCGCAAGGACACAGTCTAGTCCAGAACTCACAGAGACATCTTTGGATTCCTCATCTCAAATGAGGCGTGGTAGGGTCACAAAGGCTAGTAAAACATTCAATGAGAATTTAAGGTCTGATCATGGCAGCCGACAAAAATTCATTAATTCTGATGTTTCATGCAGTCAAAGTGGAAGGTCTTCTTTTGATAATCCTCCAATTTTAAAGCAAAGTTCATCACAGCAAAGCCTTGAAGTTGCTACTGATTCTAATAGTGCTACAAATAGTTATCAAGATGATAGTGGTTTCACGGTTGTTGGTGATGAGCTTACTTCTGTTTCTGAGACATTGGAACTGCAGCAACAAGAACAGCAAGACATGATCAACATGATGGAAGCTTCACAAATCCATAATTTTATTGGGCAAGTTCAAGTTCCAATGCATTTTTCTTCTCATCAACCACCTTTCTCTCTCTCTTCTTGCATAGCTTCGATGGGTTATGGTCAAAGAAATTTGTTTACCTTGATTGACCCTTCTTGGGCATCTACTTTACAGTTTCCTCAAGAATTTGTTTCATCACAACTTCCTCAATATTTTCCTAATGCTAGTACCATGAAGTTAAACACAGATGAGTTTGAAACTAGCAATGATATCCCTCATGTGAATGCAGTAAATCCAGAGGATGAGGAACATGATATGTGGCGTGATCATGATGTTGTATCTTCAAAAAGTCTTGAAAGTGATAATGAAGGGATCCAAATGCTCCCCTCTGATGAATTACAAGATTCTCTTGCAAGTCAATTTAATTATGCACCTTCTTCTAGAGTACATAACTCCGGTGCATCTGTACAGCGAGGCCATCAAAAATTTGCTACAGAAAATAAAGAATCTTGCGATGACTATTCTAATGTTTATAGACAACAAACCGGTGGAGAAAATAACATAATTACTGCTGATAGAAATATAAACTTAACCCATATTCCAATGGTACAGGTTAGCTCCGCTAGAAGTAATCTGTACTCAGAAACTTCTAGGGATAAGCTAAATGCAAAACCTTCTCGATTAACAAGGAGCAAATGGGGAAGAATTCCATCTACTTCTGAAGAAGGAAATTTCTTGCTTGGGAAAGCAAAAAATGAATGGCAATATGAAACTTCAGAACGTGCTTCATCATTACAGGAAGATGATGAAAATGGAGGTTGGGTGTCTACATCAACTGCAGCTGCCAATATGGAAGCAATAACTTCTGCTTCTTCGATGCCCACACATTCTAGAAGCCATTTATCAGGATACGAACAGCTGCATTTGAGTGGGTCAGATCCAATAATTCCATTTGCGCCAATGTTAATTGGTGGCTTGCGGCAAAAGTTGGTGGAAAATTCTGGTGTTATTCCATTTACATTCTATCCTACTGGTCCCCCTGTTCCATTCTTAACGATGGTTCCTATATACAATTTTCCATCTAGCGGATCAAATTCTGTTGGCACAGCAAATCAGGTTGATAAAGTTAATGGCTTGGAGCATCTTCATGCATATCAATCTGGCCAAAATGTTAACTCTGCTGAGAACTGTAATCAATTTGATGATCCAATTAATTTGAGCACCTCAAAAGGTACTGTTACGGATTCATCTGAAGCATACAAGCCAGACATACTCAACAGTGATTTTGCTTGCCATTGGCAAAACTTGCAATACGGGCGGTTCTGCCAGAACATTAAAAGCCACGGATCATTCACTTATTCTCCTCCAGTAGTGGTGCCTCCAGTCTATCTACAGGGTCATTTTCCCATGGATGGTCCTGGTAGACCACATTCAGCTAATATGAATGTCTTTACACAGGTCATGAGCTATAGCCCTAGATTGCTTCCAGTCACTACTCTGCATCCAGGACACAGCAGGCCTTCTGGTGCTTTCCACCGTTATGGAGATGATTCACCAAGATCTCGGAGTGGTACTGGAACATATTTTCCAAACCCCAAAGCATCTTTCAGAGAGAGACATTTTTCAAATGCCAGAATTCAGAGGGGAAGCTACAAGCATGATCGCAGCGACCAGGCAGACAGAGAAGGGAGTTGGATTAATTCCAAGGCGCGTTCTGCTTCTCGCACACACACCCGAAATCATAATGAGAGGTTAAATTTGAGGCATGAACAGTTCAACGCCCATCATCACTCTCAGAATATCTCTATTCGGCCATCAAACTTGCCCAGCGATCCTGCGAACTTTCCTTATGGCTTTTATCCTCTGCCACCGGGCAGCAGCTCCAATGGGGTCACTTCCTCTGTTCCTTCAGTTGTGATGCTGTACCCATATGAGCAGGGCATGAACTGCGGGTCATCCTCCGATTCACTTGAATTTGGTTCATTCGGCTTGGGTCATCTCCCCGGTACGGAGGGGAACACGATTAGAAGAGTGCATGATTCAAGATATCCCACGAATAGAGGAATTTCTCCGCGATCTTCTCCAGACCAACCGTCCTCACCACATATACCAAGGAGTACTTGCCAGCTTCTTCATTCTATCGTTCAACAAAATAAAATTGAATTCCTCCTTGCTTTGCTTCGCTTCGGTAGCCTTCTGGCTTTTCGCGTTTGTCTCCCGCGCGCTGTGATCTCAGGAAAAACCTTAGTCTGCTCTCTGCCTACCTCTACTATGGCATGGATAGCCAAATCGAAGAACTTCGGGTCTTTCTCCATTCCCTCCCTAGGGAAGTATGCTCGTCCCTCCTATTGCTCCGTCGCCGCCGCTGGTGCTAACGATGAATCGTCAGACGACACCGTGGCGGAGCTCCTGACGATGGGAGACAGGATTCTGGGGCTTATGAAGATGGAACGAAGATTTGAATCCAATGGATTTGTCGGCCCGTGGTTCCCTTACCTCGATCTTTACAGGATTGGATCGACGTCACTGAGCTGCAGGGAGGTCATTGAGGTGCTGGAACCGCACATCCTGAATGCGTGGAAAGAGAGGATTCGAAGAGTGGTTCATAATCGTAGCTACTCGGTGAGTTTAGTTGTGGAAGGGCTTACTTATTTTGGGAACGTCTCTGCAGCATTCAGGTCAGCTGACGCTCTCGGGATTCAGTTGGTTCATGTCATTTCTAGTGACAGGAAAAGGTGCAGCCGTAACTGAGGTGAAATAAATGAAAGTGTTGCGAAACATTTTATTTTTTATTTATTTTTCTTCACAGCTAAAGAAACATATGTTTTTTCTTACTAGACCCAAGTTGTTTTGATGGG

Network for GWHGAAEX003171

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01909.22	NTP_transf_2	108	176	8.10E-05

Protein Sequence

>GWHPAAEX003171
MLDVVIEVDILKSGLKGKVKRQSLGDLQLPYMGENEVWAKPGGLLLNGLLPNEISCVTRVLDAERWAKAEARTTDLLAYIQPNRPSEERRNAVANYVQRLIMKCFSCEVFTFGSVPLKTYLPDGDIDLTTFSKNDDLRDTWANDVREVLENEERNESAEFRVKEVQYIQAEVKIIKCLVENIVVDISFNQVGGLCTLCFLEEIDHLISQNHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHVFNNSFTGPLEVLYRFLEFFSHFDWDNFCVSLWGPVPISTLPDMAAESPRKDGGDLLLSGVFLEACSSVYAVFPGGQENHGQQFTSKHFNVIDPLRTNNNLGRSVSKGNFYRIRSAFAFGANRLARLLDCPKEDVIAEVNKFFMNTWERHGTGNRPDISFPANLSMTSLNIESVEVSNSSRGTASLLKSTGSIGPQVGLEPVPKGNLASHNSISQAINTTTQRPPNAFRTSNSAFVSRSPRQKGYANQISPRETDHFERNIGTVMPAKYAKNQKNLRPNYTDLEKHGSFQFARTQSSPELTETSLDSSSQMRRGRVTKASKTFNENLRSDHGSRQKFINSDVSCSQSGRSSFDNPPILKQSSSQQSLEVATDSNSATNSYQDDSGFTVVGDELTSVSETLELQQQEQQDMINMMEASQIHNFIGQVQVPMHFSSHQPPFSLSSCIASMGYGQRNLFTLIDPSWASTLQFPQEFVSSQLPQYFPNASTMKLNTDEFETSNDIPHVNAVNPEDEEHDMWRDHDVVSSKSLESDNEGIQMLPSDELQDSLASQFNYAPSSRVHNSGASVQRGHQKFATENKESCDDYSNVYRQQTGGENNIITADRNINLTHIPMVQVSSARSNLYSETSRDKLNAKPSRLTRSKWGRIPSTSEEGNFLLGKAKNEWQYETSERASSLQEDDENGGWVSTSTAAANMEAITSASSMPTHSRSHLSGYEQLHLSGSDPIIPFAPMLIGGLRQKLVENSGVIPFTFYPTGPPVPFLTMVPIYNFPSSGSNSVGTANQVDKVNGLEHLHAYQSGQNVNSAENCNQFDDPINLSTSKGTVTDSSEAYKPDILNSDFACHWQNLQYGRFCQNIKSHGSFTYSPPVVVPPVYLQGHFPMDGPGRPHSANMNVFTQVMSYSPRLLPVTTLHPGHSRPSGAFHRYGDDSPRSRSGTGTYFPNPKASFRERHFSNARIQRGSYKHDRSDQADREGSWINSKARSASRTHTRNHNERLNLRHEQFNAHHHSQNISIRPSNLPSDPANFPYGFYPLPPGSSSNGVTSSVPSVVMLYPYEQGMNCGSSSDSLEFGSFGLGHLPGTEGNTIRRVHDSRYPTNRGISPRSSPDQPSSPHIPRSTCQLLHSIVQQNKIEFLLALLRFGSLLAFRVCLPRAVISGKTLVCSLPTSTMAWIAKSKNFGSFSIPSLGKYARPSYCSVAAAGANDESSDDTVAELLTMGDRILGLMKMERRFESNGFVGPWFPYLDLYRIGSTSLSCREVIEVLEPHILNAWKERIRRVVHNRSYSVSLVVEGLTYFGNVSAAFRSADALGIQLVHVISSDRKRCSRN

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016779	Molecular Function	nucleotidyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.040
SRP064423	SRR2545915	Juvenile tuber	15.410
SRP108465	SRR5643513	five period of Gastrodia elata	9.120
	SRR5643514	five period of Gastrodia elata	8.760
	SRR5643515	five period of Gastrodia elata	9.950
	SRR5643524	five period of Gastrodia elata	9.390
	SRR5643525	five period of Gastrodia elata	11.680
	SRR5643528	five period of Gastrodia elata	10.450
	SRR5643658	five period of Gastrodia elata	11.560
	SRR5643659	five period of Gastrodia elata	8.510
	SRR5643660	five period of Gastrodia elata	9.000
	SRR5643661	five period of Gastrodia elata	8.260
	SRR5643662	five period of Gastrodia elata	8.840
	SRR5643663	five period of Gastrodia elata	9.840
	SRR5643664	five period of Gastrodia elata	10.060
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.460
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.640
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.640
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.250
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.130
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.160
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.270
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.390
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.650
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.760
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.570
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.570
SRP279888	Gastro	Gastrodia elata tuber	13.40
	Juven	Juvenile tuber	13.51
	Mother_Gastro	Mother tuber of Gastrodia elata	14.44
	Mother_Juven	Mother tuber of Juvenile	17.15