Detail information of GWHGAAEX003173/evm.TU.scaffold_130.27


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|110636501|ref|YP_676708.1|2.00E-64homoserine kinase [Cytophaga hutchinsonii ATCC 33406]
KOGKOG15374.00E-131Homoserine kinase
nrgi|700253646|gb|AIU48445.1|1.06E-155homoserine kinase, partial [Iris japonica]
Swissprottr|Q8L7R2|KHSE_ARATH1.00E-131Homoserine kinase (Precursor)
trEMBLtr|A0A097PK84|A0A097PK84_9ASPA4.00E-156Homoserine kinase {ECO:0000313|EMBL:AIU48445.1} (Fragment)
TAIRAT2G172654.00E-131homoserine kinase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000129653418654997-
Transcript Sequence

Network for GWHGAAEX003173

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00288.25GHMP_kinases_N1462112.70E-11
PF08544.12GHMP_kinases_C2743494.10E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00872thrB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of amino acidsmap01230
Pyrimidine metabolismmap00240

Gene Ontology

GO term OntologyName
GO:0006566Biological Processthreonine metabolic process
GO:0004413Molecular Functionhomoserine kinase activity
GO:0005524Molecular FunctionATP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms6.680
SRR2545915Juvenile tuber6.390
SRP108465SRR5643513five period of Gastrodia elata25.990
SRR5643514five period of Gastrodia elata31.700
SRR5643515five period of Gastrodia elata27.360
SRR5643524five period of Gastrodia elata29.990
SRR5643525five period of Gastrodia elata23.020
SRR5643528five period of Gastrodia elata18.220
SRR5643658five period of Gastrodia elata21.900
SRR5643659five period of Gastrodia elata26.030
SRR5643660five period of Gastrodia elata23.750
SRR5643661five period of Gastrodia elata26.200
SRR5643662five period of Gastrodia elata36.250
SRR5643663five period of Gastrodia elata30.170
SRR5643664five period of Gastrodia elata32.620
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_123.080
SRR6049655Rhizomagastrodiae_C368-T10_good_136.610
SRR6049656Rhizomagastrodiae_C368-T07_good_123.670
SRR6049657Rhizomagastrodiae_C368-T07_good_120.810
SRR6049658Rhizomagastrodiae_C368-T04_good_115.280
SRR6049659Rhizomagastrodiae_C368-T04_good_111.970
SRR6049660Rhizomagastrodiae_C368-T01_good_116.050
SRR6049661Rhizomagastrodiae_C368-T04_good_115.120
SRR6049662Rhizomagastrodiae_C368-T01_good_121.370
SRR6049663Rhizomagastrodiae_C368-T01_good_116.830
SRR6049664Rhizomagastrodiae_C368-T10_good_132.550
SRR6049665Rhizomagastrodiae_C368-T10_good_132.550
SRP279888GastroGastrodia elata tuber 35.10
JuvenJuvenile tuber43.16
Mother_GastroMother tuber of Gastrodia elata 20.34
Mother_JuvenMother tuber of Juvenile 29.15