Gene detail

Detail information of GWHGAAEX003177/evm.TU.scaffold_130.31

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1041	Translation initiation factor 2C (eIF-2C) and related proteins
nr	gi\|672127493\|ref\|XP_008787212.1\|	PREDICTED: protein argonaute 7 [Phoenix dactylifera]
Swissprot	tr\|Q75HC2\|AGO7_ORYSJ	Protein argonaute 7
trEMBL	tr\|F6H5X3\|F6H5X3_VITVI	Protein argonaute {ECO:0000256\|RuleBase:RU361178}
TAIR	AT1G69440	Argonaute family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000129	738124	741600	-

Transcript Sequence
>GWHTAAEX003177 TCCGTTTAATTGCATCATAGGATTAAATAAATTTATGTTGAATAAAAATAAAAATAAAAATAATTCATTATTTATAAAAATTAATATTAAGCTAAATAGCATTCTTCTTAATTTGTATTGCACTGACTCTGCTCGTATCTTTTTATCCAAAAGAACCCAGCCTATCTCGAACTCCTTATATGACCGAAGAGAAATAAACTCCTTTCTTAGCTTCGTGTTCCTTTGCTCTTCACTCCTGCCATAAATCGCATTCCCCATTTGAGGAATTTGGAGCAGAGAAGCATCAAAAAAGAAGTAAAACTTTTGAATCTTAACCCAGCCCCTTCCTCCTGTCACCGCAATAACAATAATAATACTAACAATCCCTCCTGCCCCCTTTGTCCTCAGCTCCTTTATATCTGCCCACATCCGCTTTGTCCCTCCCCCCTCTTGAGAAAGCGAAAGGCAAAGTCAGGGAAAGGGACAATGGAGGAAGCCAAAGATGCGAGGAGAGGCAGCAGAAAGTGCAGTCCTTTAAGGGGAAGAAGAACAGCTCTCTGTAACTCAACCCATCATCCTCTTCACGAGAGATTCCACTTTCATCAGCCAAGTCGCCAAGCTCTGCCTGCCCTTCTCCCTCTTCCCATCATTCCGCCAATGCTTCTTTTCATACCCCCAACTCCTCTCCCTGGATCTTCCGAAGCTCAAGTCGCATTACTTCCCATTCCCCAAGATACGGAGCTTAGAAGGGGAGGAGGCCGAGCCATGTATTCCTCTGCTTCTTTCAACGGAGACTCAAAACTCTCGTCTTTAGGATTGGCCGCTGCGCGGCGGCCTGACAGCGGCGGCAAGGACGGCTCCCCGATTTCTCTTCTGGCAAACCATTTCCTCGTCGAATTCGATCCGAAGCAGAGAGTTTATTACTACGACGTAGACATTTCTCCTCGGCCGTCTAAGGAGGTAGCTCGAAGGATCAAGAGGAAGCTGGTGATGGAAAACTTCGGCCCGCTCGGAGGATCCATGCCTGCATTCGACGGAAGGAAGAGTCTTTACAGCTCGGTTGAATTCGTCGATGATAGATTCGAGCTTTTTGTCGCTCTGCCCATCTCCAAAACCGGATCTTTGAGCCCAAAATCGAAGCTTTTCAGAGTGAGCATCAGGCTGGCGTCCCGGCTGAGCGGAGAGGAGCTGGGAAAGTACTTAAGAGAGGACCAGAGGGACGGAGTTGTTCTTCCTCAGGACTATCTCCACGCTCTCGACGTCGTTCTTCGCGAAGGCCCTTCGGAGAATTGCGTGTCAATGGGACGGTCTCTGTTTCCTGTGTCCACGGGAGGCGGCAGAGACATCGGGGGAGGGGCTGTGGGAGTCAGAGGCTTCTTCCAGAGCCTCAGGCCGACGCAGCAAGGCTTGGCCCTCAATTTAGATTTTTCAGTAGCAGCTTTTCACGAGAGCATTGGCGTCATTGCTTACTTGCAGAAGCACTGCGCTTCCTTGAAGGAGCTTTCGCAGAGGAGGACGAGGCGGTTGTCTGAGGAGGAGAGGAGGGAGGCGGAGAGGGCTTTGAAGGGCGTCAGAGTGTTTGTCTGCCACAGGGAGACGGATCAGAGATACAGAGTTTTTGGTCTCACGAGCGAAGCTGCGGAGGATCTGAGATTCGGAGACAGGGATGGGAGGGAGCATTCGCTGATGGAGTACTATAAGGAGACCTACAGCCATGATATAGAGTTCAAAAAGCTTCCTTGTTTGCAGATTAGCAGGAGCAAGCCTTGCTATCTCCCCTTGGAGCTCTGCATGGTCTGCGACGGGCAGAAGTTTATGGGAAAGCTCTCCGAGGATCAGACCGCTAAGATCTTCAAGTTGGGCTGCCAGAGACCCGCGGACCGCAGAGATGCCATCAATCAGATCATAAAGGGGGATGTTGGGCCAACAAGAGGTGGCTACGCCCAAGAGTTTAAACTGAAGATTTCAAGGGAGATGACCCAGCTCCAAGGAAGAGTCCTCGAAGCGCCGAAGCTCAAGCTGGGTAACGGCGGAACGGTGAGGGATCTGACCCCAAACCGGCACGACAGGCAGTGGAGTTTGCTGAACAGCCAGGTGGCGGAGGGGTCGGAAATCAAACGGTGGGCTCTGATAAGTTTCGGCGGCACCTCTGAGCAGCGTTCCTCGATTCCTGGCTTCATAAGCCGTCTCTCGCGGCGGTGCGAAAAGACCGGCGTGGCGCTGAACGCTATCCCCGTCGTCGCCCCCTCGTTCGAGCCGACGTCGATCCTGAGCAGCGCGTCGGCTCTGGACCTCAGGCTGAGGAAATTCTACGAGTCGGTTTCAGGAAGCATCCAGCTTCTGATCATTGTGATGGAGAGGAGGCACAAAGGGTACGCAGATCTGAAGAGAATTGCGGAGACCGGGATTGGCGTCGTGAGCCAGTGCTGCCTTTACCCCAACCTCGCCAACCCCACCTCCCAATTCCTTACAAACCTCGCCCTGAAGATAAACGCGAAGCTCGGGGGCTGCAACGTGGCCCTCTACAACACCATACCCGCCCAATTCCCGCGAATTTTCAACGGGGATTCGGCAGCGATGTTCATGGGTGCGGACGTGACGCACCCGCACCCGTTCGATGACCGCAGCCCGTCTGTGGCCGCCGTGGTGGCCAGCACCAACTGGCCGGCGGCGAGCAAATACGCTTCCCGAATGCGATCGCAGACCCACCGACGAGAAATTATCGAGGAGCTCGAGGAGATGGTGCGGGAGCTGCTGGAGGAATTCGCTGCCGAATCCCGCAGCCTCCCCGCCAGGATCATCTTCTTCAGGGATGGCGTCAGCGAGACGCAGTTCCGGAGAGTGCTGAGAGACGAGCTGAGGGCCATCCGCGCCGCGTGCGGGAGGTTCCGCGGCTACGCCCCCGCGGTGACGTTCGCGGTGGTCCAGAAGAGGCACCACACTAGGCTCTTCGTGAACGACGGTCGGCGGAACGACGAAAACGTGCCGCCGGGGACCATCGTCGACAGCGTGATAACGCACCCAGGGGAGTTCGATTTCTACCTGTGCAGCCACTGGGGGGCCAAGGGGACCAGCAGGCCCGCCCACTACCATGTCCTGTGGGACGATAACAATTTCAAGTCTGATGAGTTTCAGAAACTGGTGCATCATTTGTGCTACACCTTTGTCAGATGCACCAAGCCCGTTTCTCTTGTCCCCCCTGCTTACTATGCTCATCTCGCTGCTTACAGGGGAAGATTGTATCTCGAAAATTACAGCACCAGCTCTATCTCTAGACCTTCCCTTCCAAAGCCTCCCCAGCCTTTGCCCAAGATTAGAGACAGCCTTAAGAAGCTCATGTTCTATTGTTAG

Network for GWHGAAEX003177

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16486.4	ArgoN	126	261	1.00E-23
PF08699.9	ArgoL1	272	320	9.80E-14
PF02170.21	PAZ	336	454	2.60E-21
PF16488.4	ArgoL2	465	511	5.70E-08
PF02171.16	Piwi	619	918	1.30E-95

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11593	ELF2C, AGO	Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.180
SRP064423	SRR2545915	Juvenile tuber	12.220
SRP108465	SRR5643513	five period of Gastrodia elata	12.570
	SRR5643514	five period of Gastrodia elata	10.570
	SRR5643515	five period of Gastrodia elata	8.050
	SRR5643524	five period of Gastrodia elata	10.800
	SRR5643525	five period of Gastrodia elata	0.600
	SRR5643528	five period of Gastrodia elata	0.750
	SRR5643658	five period of Gastrodia elata	0.500
	SRR5643659	five period of Gastrodia elata	6.300
	SRR5643660	five period of Gastrodia elata	6.100
	SRR5643661	five period of Gastrodia elata	8.510
	SRR5643662	five period of Gastrodia elata	4.140
	SRR5643663	five period of Gastrodia elata	3.980
	SRR5643664	five period of Gastrodia elata	3.890
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.020
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.420
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.110
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.710
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.170
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.690
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.410
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.940
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	21.480
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	21.480
SRP279888	Gastro	Gastrodia elata tuber	5.66
	Juven	Juvenile tuber	95.20
	Mother_Gastro	Mother tuber of Gastrodia elata	15.60
	Mother_Juven	Mother tuber of Juvenile	59.07