Gene detail

Detail information of GWHGAAEX003181/evm.TU.scaffold_130.36

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|337750325\|ref\|YP_004644487.1\|	alpha-L-fucosidase [Paenibacillus mucilaginosus KNP414]
nr	gi\|743837890\|ref\|XP_010936539.1\|	PREDICTED: alpha-L-fucosidase 2-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q8L7W8\|FUCO2_ARATH	Alpha-L-fucosidase 2 (Precursor)
trEMBL	tr\|A8J657\|A8J657_LILLO	Alpha-1,2-fucosidase {ECO:0000313\|EMBL:BAF85832.1}
TAIR	AT4G34260	1,2-alpha-L-fucosidases

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000129	778075	837446	-

Transcript Sequence
>GWHTAAEX003181 ATTTGTGACATTCTTAAAAGGTATTATAAGAATGCTTTCCCATTTTTGAAGGCCTTTTCCCATTTTTGAAGGCCTCGGAGCTTTTACAACATACAGACTTGGCAAACATAGTTCTACGAATGGAGCCAGACGAAGCAGGAGGAGAATGGGTGTGGGTTAGTCCGCCAAAGGAATCGGACACAGAGTTTTGGGGCGATAACGATTACGACGATGACGAGGCGTCGAGGCCTTGTAAAGTGATCTTCACGCAGCCGGCGAAGCATTGGACCGACGCCGCTCCCATCGGCAATGGTCGACTCGGCGCCATGGTTTGGGGCAACGCTCGTAATGAGACTCTTCAACTCAATCATGATACTCTGTGGACTGGTGTGCCGGGTGATTACACGAATCTTGACGCACACAATGTTCTTTCTAAGGTCAGGAAACTCGTTGACGACGGGAAGTATACTGAAGCAACCACTGCAGCTTTTGGGCTCTCAGACCATTCGCCAGAGGTTTACCAGCCACTTGGAAGTATCAACCTTGAATTTGATGATTCCCATCTGAACTATACTTCTTATGTGCGAGAACTTGATTTGTCAACTGCAACTGTGACGGTCAAGTACAATTTAGGGAATGTAAAATTCAGTAGGGAGCATTTCTCATCAAATCCGCATCAGGTGGTAGTGTCGAAGATCTCTTCTACCAAAGCAGCTTCTGTGTCTCTTACTGTATATTTGGATAGTAAATTAAACCATCGCTCCAATGCAAATGCAACAAATCAGATAATCATGGAAGGTAACTGTCCTGGAAAGAGAAAGCCGCCTAATGTTAAAGTGTCTGAAAATTCAGACGGAATTCAATTTGCTGTAGTTCTTGATGTTCAGATAGTTGGTACTAATGCTGTGGTGCAGGTTATAGAAGGTAGGAAGATAAAAATTGATGGAGCAGATTGGGTTATTTTGCTTTTAGCTGCATCATCTTCATTTGCAGGACCATTTACAAATCCGTCTGATTCTAAAAAGGATCCAAAATCTGAATCACTAAATGCTGTGAATTCGATTAAAAATTTTACCTACTCTGAATTATTAGCATATCATCTGGATGATTATCAAAATCTTTTTCGCCGGGTTGCATTACAGCTGTCCAATGGTTCTAATGCCATTGAAAATATGAATTTTAGCCATACAAAGCATGATACAATCTGTGGCATTAATCTTAGTGCAACAACGAAACTAAATTCATTGAAAATGGATTGTTTGAAGAACAGTGACGCTCTTATGTCAACCGCCCAAAGAGTGGAATCCTTTAAAGCTGATGAGGATCCTTCTTTGATAGAACTGCTGTTTCATTATGGACGCTATCTGCTTATCTCTTGCTCAAGGCCTGGAACTCAGATTTCTAATTTGCAAGGCATATGGAACAATGATCTTGAGCCTCCATGGGATGCAGCTCCTCACATGAATATCAATTTACAAATGAACTACTGGCCATCTCTTTCTTGCAACCTTAGTGAATGCCAGCAGCCATTGTTTGACTTCATAACATCTCTTGCAGTCAATGGTGCTAAAACAGCAAAAGTCAATTATAAAACAGATGGTTGGGTTGCACATCAAGTCACCGATTTATGGGCAAAAACATCGCCCGATCAAGGTGATCCGGTTTATGCCTGCTATCCAATGGGTGGAGCCTGGCTTTGCACACATCTTTGGGAGCATTATACCTATTCTTTGGATAAGGATTTCTTAGAGAACACAGCGTACCCTCTTTTGGAAGGGTGCGCTACTTTTCTTTTGGACTGGCTGATCAAAGGTAACAGCGTCTATTTGGAAACCAATCCTTCAACTTCACCAGAGCATCATTTTATTGCACCTGATGGAAATACTGCAAGCGTCAGCTATTCATCAACCATGGATATAGCAATAATTAGAGAGATCTTCGATGCCATTATATCTTCTGCTGAGGTGTTGGGTAAAACAGATGCTGATTTAGTTAAAAGAATCAAGACTGTCCTTCCGAAGCTTCCTCCGGCAAGAATCTCCAGGGATGGCTCCATCCTGGAATGGGCACAAGATTTTGAAGATCCAGAAGTTCATCATAGGCATGTTTCCCACTTGTTTGGTCTTTTCCCAGGGCATACTATTACAGTTGAAAAAACACCGGATTTATGCAAAGCTGTTGCCAACAGCCTATACAAAAGAGGGGATATGGGGCCAGGATGGTCGACAACATGGAAGATGGCATTGTGGTCCCATCTTCGCGACAGCGCACATGCTTACTTGTTGATCAAACAATTGATCAACCTAGTTGATCCCAACCATGAAGAGGATTATGAAGGTGGCTTGTACAGCAATTTGTTTACTGCTCACCCTCCATTCCAGATTGATGCCAACTTCGGCTTCTCAGCTGCAATCGCAGAAATGCTTGTGCAGAGCACACAGGAGGATCTTCACCTTCTGCCCGCTCTGCCTCGCGATAAATGGCCCAGCGGTTTTGTCAGAGGATTAAAAGCCAGGGGCGGAGTTACAGTCAGTATTTCTTGGAAGGAAGGGGGGCTTCATAAAGCCAGGTTATGGTCAAAGACTCAGAATTCACTTAGAAGACTGCATTATAATGGTGCTGTTGCTTCCATCATGCTTTCATCTGGAAAAATCTTTATCTTCAACCAGCACTTGAAATGCATGAAGACAGTGTCTATAGTTGAAGGAGTATCATCATAAGTTTCAGGAATAAACGCTACCACTGCTCTCCTTCAGGTCAGATTTTCTACCCTTAACAATTCATTTGCCAAGTATAAATCACTTGCAAAACAACAATTGCTTTTTCTTTCTTGCCTTCATTCTAGAAAATGTATCTATGGTATGGCAAACAGTTTGCTCATTTATTTACATTTAGGTTTTCATTTAAAGCTCTCATAGAGAGCTGTTTTTTGGTTTACTTTCTCATTAAGTAAACCTTACAAAGTAGTTCCCCGTATTATTAAATAGTAAACAAGAGATTACAACTAGAAACTATGGCTCAGAATTTTTTTAATAACAGAGGTGGTGCCGGAGAGATTGCTCTGCAGGTAATATATGAATCTGGGAATAATTTTT

Network for GWHGAAEX003181

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14498.5	Glyco_hyd_65N_2	41	284	5.60E-62

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH95

KEGG pathway

KO	Enzyme	pathway	mapID
K15923	AXY8, FUC95A, afcA	Other glycan degradation	map00511

Gene Ontology

GO term	Ontology	Name
GO:0004560	Molecular Function	alpha-L-fucosidase activity
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.240
SRP064423	SRR2545915	Juvenile tuber	12.110
SRP108465	SRR5643513	five period of Gastrodia elata	6.040
	SRR5643514	five period of Gastrodia elata	7.480
	SRR5643515	five period of Gastrodia elata	5.750
	SRR5643524	five period of Gastrodia elata	7.110
	SRR5643525	five period of Gastrodia elata	6.600
	SRR5643528	five period of Gastrodia elata	5.960
	SRR5643658	five period of Gastrodia elata	5.330
	SRR5643659	five period of Gastrodia elata	4.490
	SRR5643660	five period of Gastrodia elata	4.370
	SRR5643661	five period of Gastrodia elata	4.330
	SRR5643662	five period of Gastrodia elata	3.900
	SRR5643663	five period of Gastrodia elata	4.090
	SRR5643664	five period of Gastrodia elata	3.390
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.780
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.210
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.620
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.980
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.550
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.810
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.060
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.630
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.680
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.380
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.550
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.550
SRP279888	Gastro	Gastrodia elata tuber	3.12
	Juven	Juvenile tuber	5.80
	Mother_Gastro	Mother tuber of Gastrodia elata	3.35
	Mother_Juven	Mother tuber of Juvenile	3.68