Detail information of GWHGAAEX003192/evm.TU.scaffold_130.47
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2341 | 5.00E-124 | TATA box binding protein (TBP)-associated factor, RNA polymerase II |
| nr | gi|672174523|ref|XP_008807408.1| | 0 | PREDICTED: transcription initiation factor TFIID subunit 4b-like isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|F4K4L7|TAF4B_ARATH | 2.00E-142 | Transcription initiation factor TFIID subunit 4b |
| trEMBL | tr|M0SKQ5|M0SKQ5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P03380_001} |
| TAIR | AT5G43130 | 5.00E-124 | TBP-associated factor 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000129 | 959667 | 998515 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003192
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12174.7 | RST | 233 | 295 | 8.90E-20 |
| PF05236.13 | TAF4 | 632 | 935 | 1.40E-72 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03129 | TAF4 | Basal transcription factors | map03022 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006352 | Biological Process | DNA-templated transcription, initiation |
| GO:0005669 | Cellular Component | transcription factor TFIID complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 77.100 |
| SRR2545915 | Juvenile tuber | 78.790 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 40.450 |
| SRR5643514 | five period of Gastrodia elata | 30.310 | |
| SRR5643515 | five period of Gastrodia elata | 33.920 | |
| SRR5643524 | five period of Gastrodia elata | 29.800 | |
| SRR5643525 | five period of Gastrodia elata | 29.420 | |
| SRR5643528 | five period of Gastrodia elata | 23.640 | |
| SRR5643658 | five period of Gastrodia elata | 24.650 | |
| SRR5643659 | five period of Gastrodia elata | 49.680 | |
| SRR5643660 | five period of Gastrodia elata | 53.060 | |
| SRR5643661 | five period of Gastrodia elata | 52.810 | |
| SRR5643662 | five period of Gastrodia elata | 46.890 | |
| SRR5643663 | five period of Gastrodia elata | 49.680 | |
| SRR5643664 | five period of Gastrodia elata | 50.080 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 54.600 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 57.720 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 46.790 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 58.480 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 70.990 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 77.230 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 66.250 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 68.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 48.560 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 53.930 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 40.010 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 40.010 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 50.03 |
| Juven | Juvenile tuber | 57.56 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 32.44 | |
| Mother_Juven | Mother tuber of Juvenile | 47.34 |