Gene detail

Detail information of GWHGAAEX003198/evm.TU.scaffold_130.55

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2842	6.00E-92	Interferon-related protein PC4 like
nr	gi\|743859660\|ref\|XP_010942806.1\|	2.51E-157	PREDICTED: interferon-related developmental regulator 1-like isoform X1 [Elaeis guineensis]
trEMBL	tr\|M0T9Q4\|M0T9Q4_MUSAM	7.00E-150	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P24060_001}
TAIR	AT1G27760	6.00E-92	interferon-related developmental regulator family protein / IFRD protein family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000129	1182467	1193479	-

Transcript Sequence
>GWHTAAEX003198 AAGACTTTCCAGTCAACCACGGCCTCCCATTTTCTTCAACGCCATCGCCCCTCGTTTCTCCCGGGTTTTCTCGTCCACTCCCCTTGCAAATTGCTCCTCCTCACATGGCTTTGATCTTCTCCGGACAATTCCTGGCCATCTACTTCTCTTCTTCTTCGATCTCAATCGCGATAATTGCTTGGTTTATGAATTCTTCCGGTTCGAACTGTGATTCCTATTTTCATCCTGTTTCTTTTCGTTCGCATCTGACCCGCCCTTAATTCCGTCTTCCGAGGGCAAGGTTTCGCTATGGGGAGGCGAAAGCCGAAAACCGTGGATGTAGATCAGCTCGATTATAGTGATGCTGGTAGCTTGGATTATAGTTTTTCGGCTTTCTCAGACCATGCTTTGGCTCAAGAGGTGGAGATTGTTGATTCACAGGAGTTTGTGCTTGAAAAGCACCTTGATGCTTTGTATGAGAAGAGAGGTTCAACAAGAGAGATCGCACTGGCTGGGCTTGTTAGTGCATTTGAAGGTCATGTGCTTCTTGATTTCATAGAGAGCAGATGTATCACTTTGTTACATCAATATATCACTTCATTGAAACGTGGTTCTGTAAAGGAAGCTTGCTTGGCTGCTCGTGCTATTGGGTTGCTTGCTATCACTGGCGGGACTGGCAACGATACTCATGAAATTTTGGAGGAGTCAATACAGCCTCTCTCTCGTGCTCTTACATCAGGACCTGATGCAGTTAGAATTTTTGCACTGGACTCTCTTGCAGTTGTCACTTTTGTTGGATCAAATAACTGGGAAGAAACTGAATCAATAATTAAAGTTATATGGGATGTTATTCACCCAAAATCACGTTCTAAGGCTGGAACTATTGCTAAACCTTGCTCAGATGTATTAGTGACAGCTCTATGTGCATGGTCATTTCTTCTGACAATCTTGACTGGTTGGAGGGTCGATCTGGATATGTGGACCGAGATGATCTCATTCCTCTGTAATCTTCTTGAAAATGGTGATCGTGCCATTCGGATAGCTGCTGGTGAAGCTATAGCTGTCATTTTTGAGATAGTGATAGCTGGTAAATTATCTACTGTTACTGATGATCTTGAGAGTCTAGAGGACATGCCTTCAAAACCAAAATGGCTCGTGTACTTACTGTCATTGAAAAAAAAGATAATATCATTAGTTTCTGATCTCTCAATGGAGGCAGGGGGCAAAGGAACTGATAAAAAGAGTTTGAATGCCCAACGAGATTCATTTCAAAAGATTTTTGATTATCTTAAGGAAGGTAAACGTCCTGAAACATCATTAATAGTTTCAAAGAAGCAAGGAGTGTTGGCAACTTCTACTTGGTCTGAACTTGTTCAGTTGAACTTTCTTAAACGCTTTCTTGGAAGTGGCTTCCTCAAGCATGCCCAGGATAATGAACTTTTGCATAAAGTATTTGATCTTATACCACACGCAGAAAGAAATCTATCAGCAATACAAAAGAGGATTGCTAGATCATCTGGTGATAGAATGAGAACACAAGGGCTGAAGAAGGATCGCGACATGGCCCAGCTTAGGAAAGGAGCTCTCGTGTTTAATGTTCCCAATTAGTAATTTTGCAATATGGAAATATTTTAGGGTTTGCATATATTGACGGATGGATCTTTTGCTGCTTCAGATCCTAAACCCTCTATAGACATTCTTGCCTCTCATTTTATTTCCATTCCGTTTGTTAAATATTGGTTTTCATGATATTGTATTTTTCTGCCAAAAAAAAGATTATTGAGTATTATGAATCTCATAAATATTGCATTCATGTAAAATGAAATTATTTAAAATTTAATTTTTTTTGTTT

Network for GWHGAAEX003198

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05004.12	IFRD	29	327	6.50E-62

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	80.060
SRP064423	SRR2545915	Juvenile tuber	51.650
SRP108465	SRR5643513	five period of Gastrodia elata	59.150
	SRR5643514	five period of Gastrodia elata	60.230
	SRR5643515	five period of Gastrodia elata	64.930
	SRR5643524	five period of Gastrodia elata	75.630
	SRR5643525	five period of Gastrodia elata	69.030
	SRR5643528	five period of Gastrodia elata	98.300
	SRR5643658	five period of Gastrodia elata	64.250
	SRR5643659	five period of Gastrodia elata	53.620
	SRR5643660	five period of Gastrodia elata	49.620
	SRR5643661	five period of Gastrodia elata	57.860
	SRR5643662	five period of Gastrodia elata	53.900
	SRR5643663	five period of Gastrodia elata	46.800
	SRR5643664	five period of Gastrodia elata	39.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	48.770
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	36.530
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	43.070
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	53.360
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	55.380
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	62.090
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	61.430
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	47.960
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	61.410
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	55.870
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	57.650
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	57.650
SRP279888	Gastro	Gastrodia elata tuber	66.87
	Juven	Juvenile tuber	85.13
	Mother_Gastro	Mother tuber of Gastrodia elata	112.81
	Mother_Juven	Mother tuber of Juvenile	131.26