Gene detail

Detail information of GWHGAAEX003200/evm.TU.scaffold_130.57

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0167	1.00E-156	FOG: Armadillo/beta-catenin-like repeats
nr	gi\|743846891\|ref\|XP_010938960.1\|	7.84E-175	PREDICTED: U-box domain-containing protein 4-like [Elaeis guineensis]
Swissprot	tr\|O22193\|PUB4_ARATH	5.00E-81	U-box domain-containing protein 4
trEMBL	tr\|M0T520\|M0T520_MUSAM	3.00E-158	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P07710_001}
TAIR	AT3G01400	1.00E-156	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000129	1278830	1281087	-

Transcript Sequence
>GWHTAAEX003200 ATTATCTGCAACTTCATTGATCCTTTATAGTAAAATGACTAAATTATTGCACACACGATTTCCAAAATGAAAAAAAAAATATGGGCTAGACTTCTATTGCCTTGGGCCGGCCCAAGGCCCCACAATTTAAAAGCTGAACGCGTTGCGCACGTAGACCCAATATAATCCGGACGGGTACGACCCAGATTCCATCAGACGTGCGGCGCGCCCGCACTCTCCCTTTCTTTTGTTCTCCTTAACCACCACTCCACCTCCCCCATCGCTTTATATTTTCTCATCCCATCAGCAACCTCTGAAACCAATGCTCCGAATCGCCAGACCAAAACTACGAATCTTCATCTTTATCATCTTCTTCTTCAATCGCTCAGCATCCATCCTCTAATCAACCCTAAGATTCGAATCCATTACCCATCAGATGGGTCCTAGTTTCAGTGACGCAGGCGACTCGTCCGGCGCTTTCAGCGACTGCAACAGCGACAGATCCGGCGAGTTCTCGATTTCCGGATCGGAAGGCGTCAGCGGCTCTGCAGCAGCCCTCCACCGCCTTCTGATCTCCTGCGCCGCCGACAACTCCGATCAGTTCATAGGCTCTTTGATCTCCGATCTAGATTCTCCCTACGCATCCATCGATCAGCAGCGCCGCTCGGCCATGGAACTCCGCCTCCTCGCCAAGCACAATACTGAGAACCGCCTGAAGATCGCTCGCGCTGGCGCAATCCGCCCTCTCGTCTCCCTCCTCTCCCACCCTGACCCCATACTTCAAGAAAACGGCGTTACCGCAATCCTCAACCTCTCCCTCTGCGACCAGAACAAGGATCTGATCGCCGCCTCCGGCGCCATTAAGCCCCTCATCTGCGCTCTCAAGATCGGCACCCCCGCCGCGCGCGAGAACGCCGCTTGCGCCCTCCTCCGCCTTTCCCAGATCGAGGAGCACAAGATCGTGATCGGACGGTGCGGCGCCATCGCGCATCTAGTGAATCTGCTCGAGACCGGCGGGCCTCGAGGGAAGAAGGACGCGTCCACAGCCCTCTACTCCCTCTGCTCCACCAAGGATAACAAGATCCGGGCAGTCAAAGCCGGAATCATTCGCCCCCTTCTCGATCTGATGTCCGATTCGGAGTACGGGATGGTCGATAAGGCCGCGTACGTTCTCCACGCCGTCATGGGCGTTCCGGAGGGCCGATCGGCCGCGGTTCAGGAAGACGGCATCCCTGTTCTGGTGGAGCTCGTCGAAATCGGAACACAGAGGCAGAAGGAAATCGCTGCCTCCGCCCTTCTGATGATCTGCGAGGAGAGCGTTCAGTATCGAGCCATGGCCGTTCGAGAGGGAGTCGTCCAGCCGCTCGTCGCGCTCTCTCAGTCCGGCACTGCCCGAGCCAAACAGAAGGCGGAGGCGCTTATTCAACTGCTGCGGCAGCCGAGGGTGGTGTGCAGCGGGTAAAGTGACACGTGGCGGCGCGTGGGGGTGTTTACGTCGCATTATCGTAGGCGTGTAGATATTTCGCCGCGGCCTGGAGTGAGCTGCTTGAATTAGGCAGACCAAGGGAGGGATAAGCAACCTCCTAAGATGGGTCGAGGGAGTGTGTGGTCACGTGGCATGGGCCCGCCACCACTAGGCTGGCTGCACAGAGCTGTACATTGCCGGCCGTGCGCTTGCGGTTTTAGGTTTGGTTTTTTTTTGCCTCCAATAAAACTGCTACATTATCCAAATCGGGATTTAAAATATCTTCTCGGATTTAAAAGAAAATTTGGACAACTAAGAGGCATTTTAAAATCCGTTTTAGAAAGATATTTGTATAATCAATGCGACTTAGAAATATATATTTGCTTTATATTACAACATATAACTAATTAAAAGAAATATATATATATTTTTATGGCGTTGAATCGGGTGCACAGGTTCTTTTTTCGGGAATTTTAAATTTAAGAATTTCTTGAATGGGTTGTCGATGGGGGACACATTTAGAAAACAAAAAAGAAAAACTGGAAGCTCGCAGCCCGTACTGCACGATCTGTTCTCCAAAGAAAATACACATTCAATTTATTTTCTTATTTATTTTTCTTGTATTTCTTGCAAACAGCCTCAAAATACTCTTAAATAATTTC

Network for GWHGAAEX003200

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00514.22	Arm	88	127	1.30E-06
PF00514.22	Arm	172	210	7.70E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	13.320
SRP064423	SRR2545915	Juvenile tuber	7.530
SRP108465	SRR5643513	five period of Gastrodia elata	25.090
	SRR5643514	five period of Gastrodia elata	19.940
	SRR5643515	five period of Gastrodia elata	23.080
	SRR5643524	five period of Gastrodia elata	19.390
	SRR5643525	five period of Gastrodia elata	73.780
	SRR5643528	five period of Gastrodia elata	38.870
	SRR5643658	five period of Gastrodia elata	62.610
	SRR5643659	five period of Gastrodia elata	13.670
	SRR5643660	five period of Gastrodia elata	13.640
	SRR5643661	five period of Gastrodia elata	21.560
	SRR5643662	five period of Gastrodia elata	30.380
	SRR5643663	five period of Gastrodia elata	25.220
	SRR5643664	five period of Gastrodia elata	49.140
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	41.630
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	47.210
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	31.950
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	37.680
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	41.350
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	39.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	45.130
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	41.450
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.260
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	44.410
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	36.720
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	36.720
SRP279888	Gastro	Gastrodia elata tuber	20.14
	Juven	Juvenile tuber	11.16
	Mother_Gastro	Mother tuber of Gastrodia elata	30.65
	Mother_Juven	Mother tuber of Juvenile	19.32