Detail information of GWHGAAEX003206/evm.TU.scaffold_130.66
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|433640022|ref|YP_007285782.1| | 2.00E-74 | xanthine/uracil permease [Halovivax ruber XH-70] |
| KOG | KOG1292 | 0 | Xanthine/uracil transporters |
| nr | gi|672179862|ref|XP_008810107.1| | 0 | PREDICTED: nucleobase-ascorbate transporter LPE1-like [Phoenix dactylifera] |
| Swissprot | tr|Q27GI3|NAT6_ARATH | 0 | Nucleobase-ascorbate transporter 6 |
| trEMBL | tr|M0TKU7|M0TKU7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P26110_001} |
| TAIR | AT5G62890 | 0 | Xanthine/uracil permease family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000129 | 1406830 | 1413227 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003206
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00860.19 | Xan_ur_permease | 33 | 437 | 8.50E-64 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.880 |
| SRR2545915 | Juvenile tuber | 6.170 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.230 |
| SRR5643514 | five period of Gastrodia elata | 3.410 | |
| SRR5643515 | five period of Gastrodia elata | 1.650 | |
| SRR5643524 | five period of Gastrodia elata | 1.830 | |
| SRR5643525 | five period of Gastrodia elata | 1.040 | |
| SRR5643528 | five period of Gastrodia elata | 0.430 | |
| SRR5643658 | five period of Gastrodia elata | 1.020 | |
| SRR5643659 | five period of Gastrodia elata | 0.350 | |
| SRR5643660 | five period of Gastrodia elata | 0.150 | |
| SRR5643661 | five period of Gastrodia elata | 0.120 | |
| SRR5643662 | five period of Gastrodia elata | 0.380 | |
| SRR5643663 | five period of Gastrodia elata | 0.210 | |
| SRR5643664 | five period of Gastrodia elata | 0.750 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.980 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.410 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.320 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.660 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.390 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.960 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.150 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.110 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.030 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.030 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.11 |
| Juven | Juvenile tuber | 0.18 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.15 | |
| Mother_Juven | Mother tuber of Juvenile | 0.79 |