Detail information of GWHGAAEX003212/evm.TU.scaffold_130.73


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743847028|ref|XP_010938996.1|5.30E-173PREDICTED: F-box protein At3g12350-like isoform X2 [Elaeis guineensis]
Swissprottr|Q84WW1|FB140_ARATH5.00E-99F-box protein At3g12350
trEMBLtr|F6H197|F6H197_VITVI8.00E-141Putative uncharacterized protein {ECO:0000313|EMBL:CCB45748.1}
TAIRAT3G123502.00E-96F-box family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000012914572651462941+
Transcript Sequence

Network for GWHGAAEX003212

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.32F-box9461.00E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms7.690
SRR2545915Juvenile tuber7.460
SRP108465SRR5643513five period of Gastrodia elata11.060
SRR5643514five period of Gastrodia elata12.290
SRR5643515five period of Gastrodia elata15.250
SRR5643524five period of Gastrodia elata12.620
SRR5643525five period of Gastrodia elata16.320
SRR5643528five period of Gastrodia elata13.930
SRR5643658five period of Gastrodia elata16.460
SRR5643659five period of Gastrodia elata14.570
SRR5643660five period of Gastrodia elata12.700
SRR5643661five period of Gastrodia elata15.560
SRR5643662five period of Gastrodia elata16.330
SRR5643663five period of Gastrodia elata13.980
SRR5643664five period of Gastrodia elata13.150
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.930
SRR6049655Rhizomagastrodiae_C368-T10_good_114.320
SRR6049656Rhizomagastrodiae_C368-T07_good_111.180
SRR6049657Rhizomagastrodiae_C368-T07_good_110.320
SRR6049658Rhizomagastrodiae_C368-T04_good_111.500
SRR6049659Rhizomagastrodiae_C368-T04_good_111.150
SRR6049660Rhizomagastrodiae_C368-T01_good_112.340
SRR6049661Rhizomagastrodiae_C368-T04_good_19.490
SRR6049662Rhizomagastrodiae_C368-T01_good_112.480
SRR6049663Rhizomagastrodiae_C368-T01_good_116.410
SRR6049664Rhizomagastrodiae_C368-T10_good_114.140
SRR6049665Rhizomagastrodiae_C368-T10_good_114.140
SRP279888GastroGastrodia elata tuber 13.71
JuvenJuvenile tuber9.40
Mother_GastroMother tuber of Gastrodia elata 10.01
Mother_JuvenMother tuber of Juvenile 8.84