Detail information of GWHGAAEX003214/evm.TU.scaffold_130.75
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 4.00E-180 | FOG: PPR repeat |
| nr | gi|743847004|ref|XP_010938989.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9FJW6|PP451_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g67570, chloroplastic (Precursor) |
| trEMBL | tr|M0TKV3|M0TKV3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P26170_001} |
| TAIR | AT5G67570 | 4.00E-180 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000129 | 1477826 | 1535791 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003214
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 274 | 297 | 0.061 |
| PF13812.5 | PPR_3 | 351 | 397 | 0.0029 |
| PF01535.19 | PPR | 427 | 456 | 0.0084 |
| PF01535.19 | PPR | 534 | 557 | 0.06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.630 |
| SRR2545915 | Juvenile tuber | 7.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.270 |
| SRR5643514 | five period of Gastrodia elata | 4.170 | |
| SRR5643515 | five period of Gastrodia elata | 3.900 | |
| SRR5643524 | five period of Gastrodia elata | 3.500 | |
| SRR5643525 | five period of Gastrodia elata | 3.770 | |
| SRR5643528 | five period of Gastrodia elata | 3.760 | |
| SRR5643658 | five period of Gastrodia elata | 4.540 | |
| SRR5643659 | five period of Gastrodia elata | 4.680 | |
| SRR5643660 | five period of Gastrodia elata | 5.560 | |
| SRR5643661 | five period of Gastrodia elata | 3.750 | |
| SRR5643662 | five period of Gastrodia elata | 4.760 | |
| SRR5643663 | five period of Gastrodia elata | 4.740 | |
| SRR5643664 | five period of Gastrodia elata | 4.390 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.940 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.720 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.470 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.350 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.650 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.420 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.610 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.610 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.20 |
| Juven | Juvenile tuber | 9.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.47 | |
| Mother_Juven | Mother tuber of Juvenile | 7.93 |