Detail information of GWHGAAEX003216/evm.TU.scaffold_130.78
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|385809238|ref|YP_005845634.1| | 3.00E-48 | peptidyl-prolyl cis-trans isomerase A [Ignavibacterium album JCM 16511] |
| KOG | KOG0883 | 0 | Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase |
| nr | gi|743846959|ref|XP_010938977.1| | 0 | PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 [Elaeis guineensis] |
| Swissprot | tr|Q9FJX0|PPIL2_ARATH | 0 | Peptidyl-prolyl cis-trans isomerase CYP65 {ECO:0000305} |
| trEMBL | tr|M0S254|M0S254_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P22460_001} |
| TAIR | AT5G67530 | 0 | plant U-box 49 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000129 | 1542534 | 1565737 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003216
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04641.11 | Rtf2 | 94 | 176 | 8.80E-07 |
| PF00160.20 | Pro_isomerase | 387 | 538 | 8.20E-49 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10598 | PPIL2, CYC4, CHP60 | Ubiquitin mediated proteolysis | map04120 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016567 | Biological Process | protein ubiquitination |
| GO:0000413 | Biological Process | protein peptidyl-prolyl isomerization |
| GO:0003755 | Molecular Function | peptidyl-prolyl cis-trans isomerase activity |
| GO:0004842 | Molecular Function | ubiquitin-protein transferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 20.520 |
| SRR2545915 | Juvenile tuber | 22.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.020 |
| SRR5643514 | five period of Gastrodia elata | 12.860 | |
| SRR5643515 | five period of Gastrodia elata | 11.030 | |
| SRR5643524 | five period of Gastrodia elata | 12.960 | |
| SRR5643525 | five period of Gastrodia elata | 8.410 | |
| SRR5643528 | five period of Gastrodia elata | 10.330 | |
| SRR5643658 | five period of Gastrodia elata | 9.080 | |
| SRR5643659 | five period of Gastrodia elata | 13.460 | |
| SRR5643660 | five period of Gastrodia elata | 13.160 | |
| SRR5643661 | five period of Gastrodia elata | 12.250 | |
| SRR5643662 | five period of Gastrodia elata | 14.070 | |
| SRR5643663 | five period of Gastrodia elata | 11.720 | |
| SRR5643664 | five period of Gastrodia elata | 11.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.440 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.400 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.620 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.890 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.540 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.100 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.580 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.970 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.950 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.420 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.420 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.82 |
| Juven | Juvenile tuber | 14.47 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.28 | |
| Mother_Juven | Mother tuber of Juvenile | 12.64 |