Detail information of GWHGAAEX003222/evm.TU.scaffold_130.84
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0483 | 9.00E-47 | Transcription factor HEX, contains HOX and HALZ domains |
| nr | gi|743866545|ref|XP_010905085.1| | 1.27E-51 | PREDICTED: homeobox-leucine zipper protein HOX12-like [Elaeis guineensis] |
| Swissprot | tr|Q7XI85|HOX14_ORYSJ | 3.00E-47 | Homeobox-leucine zipper protein HOX14 |
| trEMBL | tr|M1AYI1|M1AYI1_SOLTU | 4.00E-49 | Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400033036} |
| TAIR | AT4G36740 | 9.00E-47 | homeobox protein 40 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000129 | 1697124 | 1699129 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003222
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00046.28 | Homeobox | 49 | 102 | 1.80E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB-other |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.790 |
| SRR2545915 | Juvenile tuber | 51.360 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 42.490 |
| SRR5643514 | five period of Gastrodia elata | 23.700 | |
| SRR5643515 | five period of Gastrodia elata | 39.400 | |
| SRR5643524 | five period of Gastrodia elata | 33.990 | |
| SRR5643525 | five period of Gastrodia elata | 31.610 | |
| SRR5643528 | five period of Gastrodia elata | 24.420 | |
| SRR5643658 | five period of Gastrodia elata | 20.340 | |
| SRR5643659 | five period of Gastrodia elata | 25.750 | |
| SRR5643660 | five period of Gastrodia elata | 16.780 | |
| SRR5643661 | five period of Gastrodia elata | 20.860 | |
| SRR5643662 | five period of Gastrodia elata | 32.010 | |
| SRR5643663 | five period of Gastrodia elata | 20.120 | |
| SRR5643664 | five period of Gastrodia elata | 18.660 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.520 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.480 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.260 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.270 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.610 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.970 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.140 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.300 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.410 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.410 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 22.67 |
| Juven | Juvenile tuber | 28.39 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 182.81 | |
| Mother_Juven | Mother tuber of Juvenile | 50.59 |