Detail information of GWHGAAEX003223/evm.TU.scaffold_130.87
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-109 | FOG: PPR repeat |
| nr | gi|743886514|ref|XP_010910160.1| | 1.08E-169 | PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Elaeis guineensis] |
| Swissprot | tr|Q9FI80|PP425_ARATH | 4.00E-110 | Pentatricopeptide repeat-containing protein At5g48910 |
| trEMBL | tr|M0UQC2|M0UQC2_HORVD | 4.00E-138 | Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_13075.1} |
| TAIR | AT5G48910 | 1.00E-109 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000129 | 1701700 | 1735346 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003223
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 44 | 69 | 0.00043 |
| PF01535.19 | PPR | 118 | 141 | 0.36 |
| PF01535.19 | PPR | 148 | 174 | 2.60E-08 |
| PF01535.19 | PPR | 178 | 207 | 1.70E-07 |
| PF13041.5 | PPR_2 | 276 | 324 | 2.80E-08 |
| PF12854.6 | PPR_1 | 343 | 374 | 1.40E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.360 |
| SRR2545915 | Juvenile tuber | 4.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.080 |
| SRR5643514 | five period of Gastrodia elata | 2.400 | |
| SRR5643515 | five period of Gastrodia elata | 2.820 | |
| SRR5643524 | five period of Gastrodia elata | 2.910 | |
| SRR5643525 | five period of Gastrodia elata | 3.790 | |
| SRR5643528 | five period of Gastrodia elata | 2.030 | |
| SRR5643658 | five period of Gastrodia elata | 2.780 | |
| SRR5643659 | five period of Gastrodia elata | 4.180 | |
| SRR5643660 | five period of Gastrodia elata | 3.730 | |
| SRR5643661 | five period of Gastrodia elata | 3.850 | |
| SRR5643662 | five period of Gastrodia elata | 3.710 | |
| SRR5643663 | five period of Gastrodia elata | 3.440 | |
| SRR5643664 | five period of Gastrodia elata | 3.320 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.250 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.110 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.160 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.250 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.630 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.220 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.860 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.420 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.980 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.740 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.740 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.11 |
| Juven | Juvenile tuber | 4.12 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.59 | |
| Mother_Juven | Mother tuber of Juvenile | 2.71 |