Detail information of GWHGAAEX003228/evm.TU.scaffold_130.93


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41974.00E-108FOG: PPR repeat
nrgi|672161565|ref|XP_008800604.1|3.68E-132PREDICTED: pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Phoenix dactylifera]
Swissprottr|Q9SZ10|PP338_ARATH1.00E-108Pentatricopeptide repeat-containing protein At4g26680, mitochondrial (Precursor)
trEMBLtr|M0RZB8|M0RZB8_MUSAM1.00E-125Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P12600_001}
TAIRAT4G266804.00E-108Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000012918595651864564+
Transcript Sequence

Network for GWHGAAEX003228

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13041.5PPR_227764.70E-13
PF13041.5PPR_2971454.80E-20
PF13812.5PPR_31912492.80E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms16.200
SRR2545915Juvenile tuber10.780
SRP108465SRR5643513five period of Gastrodia elata7.030
SRR5643514five period of Gastrodia elata4.910
SRR5643515five period of Gastrodia elata8.220
SRR5643524five period of Gastrodia elata4.460
SRR5643525five period of Gastrodia elata11.590
SRR5643528five period of Gastrodia elata12.190
SRR5643658five period of Gastrodia elata9.690
SRR5643659five period of Gastrodia elata8.980
SRR5643660five period of Gastrodia elata9.210
SRR5643661five period of Gastrodia elata7.300
SRR5643662five period of Gastrodia elata11.110
SRR5643663five period of Gastrodia elata12.030
SRR5643664five period of Gastrodia elata10.050
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.620
SRR6049655Rhizomagastrodiae_C368-T10_good_110.930
SRR6049656Rhizomagastrodiae_C368-T07_good_111.490
SRR6049657Rhizomagastrodiae_C368-T07_good_111.370
SRR6049658Rhizomagastrodiae_C368-T04_good_112.470
SRR6049659Rhizomagastrodiae_C368-T04_good_114.210
SRR6049660Rhizomagastrodiae_C368-T01_good_110.100
SRR6049661Rhizomagastrodiae_C368-T04_good_113.820
SRR6049662Rhizomagastrodiae_C368-T01_good_110.630
SRR6049663Rhizomagastrodiae_C368-T01_good_111.320
SRR6049664Rhizomagastrodiae_C368-T10_good_17.820
SRR6049665Rhizomagastrodiae_C368-T10_good_17.820
SRP279888GastroGastrodia elata tuber 19.02
JuvenJuvenile tuber8.92
Mother_GastroMother tuber of Gastrodia elata 11.03
Mother_JuvenMother tuber of Juvenile 8.65