Detail information of GWHGAAEX003229/evm.TU.scaffold_130.94


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743882170|ref|XP_010909091.1|2.02E-36PREDICTED: F-box protein SNE-like [Elaeis guineensis]
Swissprottr|Q9LUB6|SNE_ARATH3.00E-30F-box protein SNE
trEMBLtr|B6TRD7|B6TRD7_MAIZE4.00E-35F-box protein GID2 {ECO:0000313|EMBL:ACG39670.1}
TAIRAT5G481701.00E-29F-box family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000012918662711866702+
Transcript Sequence

Network for GWHGAAEX003229

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12937.6F-box-like16553.60E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms5.550
SRR2545915Juvenile tuber6.270
SRP108465SRR5643513five period of Gastrodia elata13.700
SRR5643514five period of Gastrodia elata15.610
SRR5643515five period of Gastrodia elata10.230
SRR5643524five period of Gastrodia elata17.150
SRR5643525five period of Gastrodia elata23.390
SRR5643528five period of Gastrodia elata11.640
SRR5643658five period of Gastrodia elata23.820
SRR5643659five period of Gastrodia elata9.610
SRR5643660five period of Gastrodia elata14.570
SRR5643661five period of Gastrodia elata9.860
SRR5643662five period of Gastrodia elata16.190
SRR5643663five period of Gastrodia elata13.130
SRR5643664five period of Gastrodia elata16.310
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_139.890
SRR6049655Rhizomagastrodiae_C368-T10_good_174.780
SRR6049656Rhizomagastrodiae_C368-T07_good_134.630
SRR6049657Rhizomagastrodiae_C368-T07_good_128.910
SRR6049658Rhizomagastrodiae_C368-T04_good_155.850
SRR6049659Rhizomagastrodiae_C368-T04_good_158.290
SRR6049660Rhizomagastrodiae_C368-T01_good_146.020
SRR6049661Rhizomagastrodiae_C368-T04_good_148.910
SRR6049662Rhizomagastrodiae_C368-T01_good_132.120
SRR6049663Rhizomagastrodiae_C368-T01_good_141.160
SRR6049664Rhizomagastrodiae_C368-T10_good_136.390
SRR6049665Rhizomagastrodiae_C368-T10_good_136.390
SRP279888GastroGastrodia elata tuber 36.61
JuvenJuvenile tuber15.59
Mother_GastroMother tuber of Gastrodia elata 60.59
Mother_JuvenMother tuber of Juvenile 22.32