Gene detail

Detail information of GWHGAAEX003230/evm.TU.scaffold_130.95

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672161583\|ref\|XP_008800614.1\|	PREDICTED: OBERON-like protein isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q84N38\|PVIP_NICBE	OBERON-like protein
trEMBL	tr\|M0S5P9\|M0S5P9_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P06580_001}
TAIR	AT5G48160	Protein of unknown function (DUF1423)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000129	1868057	1884718	-

Transcript Sequence
>GWHTAAEX003230 AACCTGGATATCTGTAGTCAACCACCGGCTATGTCGGTTCTCAGCTGTGAGGGCCTTTTAGAAATCCGAGCTCGCCTCCAAGTTTCCTTCCTCCATTCTTCTTCACCTCTTACGACACCGCCATTTACTCGTTCATATTGCGATCAGGTACAAGTGATCTAATTGGATAAACTTAGTTGAATGGGAACGTCTTCTGGTGCAAATTTCGATCACCAACCACCACCTAAAATGCTACCTCCCCGCCAGCATCCTAGGTCTTTAGGGCTGCAAACATCATTTTCGTTGGCTTCATCCGATGCCATTGGATCGCATGACATGCAAGAGCTTCTGTCAAACTCTGACCAGGCTCACGACTCCCCATCCGATAGCACAAGTTCTAGGGAAAACTGGCCCGCTGAGACTGTTCGATCTGGCGGTGCTAAAACTAACGCAATTTTCAAGGAGAAGGAGGGAGAGAGCGAGTTCTCTGAACCACAAGTGATTCGCCGGGTTTCAATTGCTGATAAGCTGTCTCTCCACGAAGTAGTGAGGGAGAGGATTGAGGTTATTGCTGATAGAATGACTGTTATGCCAAGTGAGCTTTTGGAAGAGCTTAAGGCAGACATGCGAGCAATACTTGAAGGAACAGGAGGACCTCATATTAGGGAGGAGTTCTCAAGGCTTCAGCAACTTTTGCAAGGCAGAGGGGACTTGACGGCTAAAACTCTTGTCAGGTCTCATAGAGTTCAGTTGGAGATTCTAGTTGCAATCAACACTGGAATTCTCGCTTTCCTGCACCCTAATGTTACACTCTCGCAGAGTCGCCTTGTCGATATTTTCTTGTACAAACGTTGCAGGAACATTGCTTGCCAGAGTTCGATTCCTGCCGATGATTGCACCTGTGAGGTTTGCAGCCGAAGGAATGGCTTCTGCAACCTCTGCATGTGTGTGGTTTGTAATAAGTTTGATTTTGAAGTTAATACATACCGCTGGGTAGGTTGTGATTTCTGTGCACACTGGACCCATGCGAACTGCGCTATGCGTACTGGTCAGATTGGAATGGGAGCATCTGGTAAGACTGGCATAGGACATGGTGAGATGCTTTTCAGATGCCCGGCATGCAGCAGGACATCTGAGTTGTTAGGCTGGGTAAAAGATGTATTTCAGCATTGTGCTCCTGGTTGGGATCGAGAGGCTTTATTACGAGAACTTGAATTTATCAGTAGGATTTTTCAACTTAGTGAGGATCTAAAAGGAAGGAAATTGTACAGGAAGTGCAATGAAATTACAGAAAAGATCAAGGGTGGTGCTACAGAGTCTATGGCATGTAGGATGTTACTGCTGGTGTTTCAAGAGCTGGAGATCGAATCCCCAAAAAAGTACGAGAACGAGGAAGCCGGCCGCGCCATCTCCCCAAAGGAGGCCTGCAGCCGGATAGCAGAGGTGGTCCAAGAGGCCGTGAAAAAGATGGAGATTGTCGCAGAGGAGAAGCTGCGCATGCTCAAGAGGGCTCGTCTGGCGGTCGAGGCCTGCGATCGTGAGGTTGAGGACAAAGCCAGGGAGGTCGCAGAGCTCAAAATGGAGAGGCAAAGGAAGAAGCTGCAGGTGGACGAGCTGGAGAGCATCATCAGGCTAAAGCAGGCGGAGGCCGACATGTTCCAGCTGAAGGCCACAGAGGCCAAACAGGAAGCCGAGAGGCTGCAGAGCATCGCCCTGGCCAAGTCGGAGAAGGCAGAGCAAGACTACGCCAGCATGTACCTGAAGCGCCGCCTGGATGAAGCCGAGGCGGAGAAGCAGTATCTGTTCGAGAAGATGAAGCTTCAGGAGAGAAGCAGCAGTGGCGTCGCCGGCAGTGGAGACGTCTCCGGCAGCAGTGATCCCGCGCAGATGCTCAGCAAAATCCAGAATTTGCTGAAAAACGTGTACAGCATCGAGCCCAAGGCAGTGGCGCATCATCGAATGCACGGCGCCGCCGTGCCCAAGCAGTAGTAATCGCGCAATGACTCTTCTCTGTTGAGCAGCCAGCTCTCAGCTACACTGGCTTTCCATTATCACCTTTATTTGAATATTTTTTTTATCGGTGAGCATAGTTATGTATTATTTTTAGGAAATAGCAATTGCTGTATGTTAACATATAGATTATAATTATTTTAGTGTGAAGCATTAATGTGAACCCATCTGTCTCGTTTTCGTTTTTTGCAATAGGTGAGGATAATATCCAAAATTAGCAATGGATTAGAACAGCATGGAAATAAATATTTGGTCGCT

Network for GWHGAAEX003230

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07227.10	PHD_Oberon	218	341	7.90E-39
PF16312.4	Oberon_cc	435	571	3.50E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	30.530
SRP064423	SRR2545915	Juvenile tuber	29.180
SRP108465	SRR5643513	five period of Gastrodia elata	38.520
	SRR5643514	five period of Gastrodia elata	32.390
	SRR5643515	five period of Gastrodia elata	37.020
	SRR5643524	five period of Gastrodia elata	35.180
	SRR5643525	five period of Gastrodia elata	44.270
	SRR5643528	five period of Gastrodia elata	39.290
	SRR5643658	five period of Gastrodia elata	42.940
	SRR5643659	five period of Gastrodia elata	37.420
	SRR5643660	five period of Gastrodia elata	40.680
	SRR5643661	five period of Gastrodia elata	43.640
	SRR5643662	five period of Gastrodia elata	42.580
	SRR5643663	five period of Gastrodia elata	36.860
	SRR5643664	five period of Gastrodia elata	39.740
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.240
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	30.110
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	38.510
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.480
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	36.510
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	34.790
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	38.700
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	36.750
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.330
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	40.870
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	43.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	43.300
SRP279888	Gastro	Gastrodia elata tuber	37.37
	Juven	Juvenile tuber	49.33
	Mother_Gastro	Mother tuber of Gastrodia elata	66.65
	Mother_Juven	Mother tuber of Juvenile	66.98