Gene detail

Detail information of GWHGAAEX003236/evm.TU.scaffold_130.102

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743867371\|ref\|XP_010905298.1\|	PREDICTED: scarecrow-like protein 21 [Elaeis guineensis]
Swissprot	tr\|Q8GVE1\|CIGR2_ORYSJ	Chitin-inducible gibberellin-responsive protein 2
trEMBL	tr\|F6HHL9\|F6HHL9_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51715.1}
TAIR	AT5G48150	GRAS family transcription factor

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000129	1990880	1992337	+

Transcript Sequence
>GWHTAAEX003236 ATGCAAGCCTCAGAAGAAAATCTTGGAAATATTTTCAAGTCTCAGCAGCCTCATCCTTTCTACAAATCCATGAAAAAATTTCATCCTCAATCCAGTAACTTTCAATACTGCACTCTTGAATCCTCTTCAGCACTTGCTTCTTACTCCTGCAGCTCTCCTTCAAATACCAGCCTTTCATCGCCTAAGGATAGCCTTTCAGATCACACATATAAATCTCCTATAAATTCTTCATGCATAACTGAAGACTTTCATGATCAAAAACTCAAATTAAAGGGATCAGAAAATGGGGTGCTTTGGCCTGACTTTCATGATACTTACAAGCTCATGGAGATTCCAAAAGATCTCAAGCAGGCGCTCATTGCTTGTGCTAGAGCTGTTTCGGATAATGATAATCTCACCGCAAATTTGCTGATGACGGAGGTGCGGAAGATGGTTTCTGTCTCGGGGGAACCAATCCAACGGCTGGGAGCTTACATGCTCGAAGGGCTCGTGGCCCGTCTTTCTTCCTCAGGCAGTGCAATCTACAAAGCTTTGAAGTGTAGAGAACCAGCTGGCTTTGAACTCCTCACTTATATGCATATTCTGTACGAGGTCTGCCCGTTCTTCAAGTTTGGTTACTTATCCGCTAATGGTGCGATTGCTGATGCAGTCAAGAAGGAGGATAGGGTTCACATTATTGACTTCCAAATCGCCCAGGGAAGCCAGTGGGTGACTCTCATTCAAGCTCTGGCAATGAGGCCCGGAGGTCCACCCCATGTGAGAATAACGGGGATTGATGACTCAGTTTCTGCCTTCGCTCGTGGCGGCGGCCTGCGTATAATTGGGCAGCAGCTATCTCGTCTAGCCGAATCATGCAGGGTGCCATTTGAGTTTCACTCCGCGTCCATTTCCGGATGTGAGGTTAAGATCGAAAATCTGGACATCCGTCCGGGGGAGGGCTTGGCTGTGAACTTCGCATTTCAGCTTCATCATGTTCCAGATGAGAGCGTGAGCACCACGAATCGTCGGGACCGGCTATTGAGGCTTGTAAAGAGTCTTGCGCCGAAGGTGGTGACTCTGGTCGAGCAGGAGTCAAACACGAACACAGCGGCTTTCTTTCCACGATTCTTAGAAGCACTTGATTACTATACGGCAATCTTCGAATCGATCGATGGGACTCTCCCAAGGGAGAGCAGGGAGAGGATTGGCGTCGAGCAGCATTGCCTGGCAAGGGATATTGTGAACATAATTGCCTGTGAGGGGGCAGAAAGAGTCGAGCGGCATGAGCTTCATGGGAAGTGGATGTCGAGGTTTAGAATGGCGGGGTTCGCTCCGTATCCTCTCAGCTCTCTGGTGAATGCCACCATTAAGGGCTTGCTGGAGAACTACTATGGTAAATATAAGCTTGAGGAAAGGGATGGAGCTCTTTTCCTTGGGTGGATGAATAGATCTCTGGTTGTGTCCTCTGCATGGAGATGA

Network for GWHGAAEX003236

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03514.13	GRAS	115	485	1.40E-134

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.580
SRP064423	SRR2545915	Juvenile tuber	28.680
SRP108465	SRR5643513	five period of Gastrodia elata	40.690
	SRR5643514	five period of Gastrodia elata	43.620
	SRR5643515	five period of Gastrodia elata	45.800
	SRR5643524	five period of Gastrodia elata	46.690
	SRR5643525	five period of Gastrodia elata	37.120
	SRR5643528	five period of Gastrodia elata	27.910
	SRR5643658	five period of Gastrodia elata	61.760
	SRR5643659	five period of Gastrodia elata	33.180
	SRR5643660	five period of Gastrodia elata	42.790
	SRR5643661	five period of Gastrodia elata	37.410
	SRR5643662	five period of Gastrodia elata	37.380
	SRR5643663	five period of Gastrodia elata	40.710
	SRR5643664	five period of Gastrodia elata	43.240
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	38.790
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	26.450
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	39.410
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	48.350
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	35.090
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	42.560
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.720
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	37.430
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.670
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.570
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	31.940
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	31.940
SRP279888	Gastro	Gastrodia elata tuber	55.05
	Juven	Juvenile tuber	73.67
	Mother_Gastro	Mother tuber of Gastrodia elata	70.26
	Mother_Juven	Mother tuber of Juvenile	89.72