Detail information of GWHGAAEX003239/evm.TU.scaffold_130.105
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|18312459|ref|NP_559126.1| | 6.00E-12 | 50S ribosomal protein L30 [Pyrobaculum aerophilum str. IM2] |
| KOG | KOG3184 | 5.00E-145 | 60S ribosomal protein L7 |
| nr | gi|695063769|ref|XP_009420403.1| | 1.42E-151 | PREDICTED: 60S ribosomal protein L7-2 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P60040|RL72_ARATH | 2.00E-145 | 60S ribosomal protein L7-2 |
| trEMBL | tr|M0RFV2|M0RFV2_MUSAM | 5.00E-152 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P06250_001} |
| TAIR | AT2G01250 | 5.00E-145 | Ribosomal protein L30/L7 family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000129 | 2010055 | 2025383 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003239
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08079.11 | Ribosomal_L30_N | 11 | 79 | 3.10E-28 |
| PF00327.19 | Ribosomal_L30 | 86 | 136 | 2.90E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02937 | RP-L7e, RPL7 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000463 | Biological Process | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0022625 | Cellular Component | cytosolic large ribosomal subunit |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 70.160 |
| SRR2545915 | Juvenile tuber | 92.530 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 126.550 |
| SRR5643514 | five period of Gastrodia elata | 151.900 | |
| SRR5643515 | five period of Gastrodia elata | 119.690 | |
| SRR5643524 | five period of Gastrodia elata | 142.900 | |
| SRR5643525 | five period of Gastrodia elata | 73.470 | |
| SRR5643528 | five period of Gastrodia elata | 84.480 | |
| SRR5643658 | five period of Gastrodia elata | 77.550 | |
| SRR5643659 | five period of Gastrodia elata | 118.950 | |
| SRR5643660 | five period of Gastrodia elata | 112.350 | |
| SRR5643661 | five period of Gastrodia elata | 124.740 | |
| SRR5643662 | five period of Gastrodia elata | 104.670 | |
| SRR5643663 | five period of Gastrodia elata | 110.740 | |
| SRR5643664 | five period of Gastrodia elata | 97.650 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 107.670 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 144.790 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 131.710 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 92.540 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 81.030 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 69.420 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 88.330 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 95.010 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 138.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 111.570 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 147.960 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 147.960 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 98.30 |
| Juven | Juvenile tuber | 106.54 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 83.57 | |
| Mother_Juven | Mother tuber of Juvenile | 77.50 |