Detail information of GWHGAAEX003240/evm.TU.scaffold_130.107


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|297620951|ref|YP_003709088.1|2.00E-12RNA-binding protein [Waddlia chondrophila WSU 86-1044]
KOGKOG42056.00E-140RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1
nrgi|672157527|ref|XP_008798476.1|0PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Phoenix dactylifera]
Swissprottr|Q8W034|RNP1_ARATH4.00E-71Heterogeneous nuclear ribonucleoprotein 1
trEMBLtr|M0T5Z6|M0T5Z6_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P10970_001}
TAIRAT3G078106.00E-140RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000012920684742094488+
Transcript Sequence

Network for GWHGAAEX003240

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_18656.70E-15
PF00076.21RRM_11091661.50E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14411MSI mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0003723Molecular FunctionRNA binding
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms20.180
SRR2545915Juvenile tuber17.440
SRP108465SRR5643513five period of Gastrodia elata19.510
SRR5643514five period of Gastrodia elata18.130
SRR5643515five period of Gastrodia elata22.290
SRR5643524five period of Gastrodia elata19.440
SRR5643525five period of Gastrodia elata27.640
SRR5643528five period of Gastrodia elata28.790
SRR5643658five period of Gastrodia elata27.380
SRR5643659five period of Gastrodia elata23.000
SRR5643660five period of Gastrodia elata20.770
SRR5643661five period of Gastrodia elata23.540
SRR5643662five period of Gastrodia elata25.560
SRR5643663five period of Gastrodia elata23.530
SRR5643664five period of Gastrodia elata21.590
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.970
SRR6049655Rhizomagastrodiae_C368-T10_good_115.170
SRR6049656Rhizomagastrodiae_C368-T07_good_122.320
SRR6049657Rhizomagastrodiae_C368-T07_good_117.010
SRR6049658Rhizomagastrodiae_C368-T04_good_118.610
SRR6049659Rhizomagastrodiae_C368-T04_good_116.750
SRR6049660Rhizomagastrodiae_C368-T01_good_116.090
SRR6049661Rhizomagastrodiae_C368-T04_good_115.700
SRR6049662Rhizomagastrodiae_C368-T01_good_120.630
SRR6049663Rhizomagastrodiae_C368-T01_good_119.720
SRR6049664Rhizomagastrodiae_C368-T10_good_125.360
SRR6049665Rhizomagastrodiae_C368-T10_good_125.360
SRP279888GastroGastrodia elata tuber 20.22
JuvenJuvenile tuber17.70
Mother_GastroMother tuber of Gastrodia elata 27.00
Mother_JuvenMother tuber of Juvenile 28.81