Gene detail

Detail information of GWHGAAEX003242/evm.TU.scaffold_130.110

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0167	4.00E-88	FOG: Armadillo/beta-catenin-like repeats
nr	gi\|743838137\|ref\|XP_010936614.1\|	0	PREDICTED: U-box domain-containing protein 4 [Elaeis guineensis]
Swissprot	tr\|O22193\|PUB4_ARATH	5.00E-81	U-box domain-containing protein 4
trEMBL	tr\|M0SLR6\|M0SLR6_MUSAM	2.00E-170	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P06990_001}
TAIR	AT3G01400	4.00E-88	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000129	2109707	2112293	-

Transcript Sequence
>GWHTAAEX003242 AGAAAAACTAAATCATATAAAATTACATAAAAATTCACAAAATTGAAGGGGCATAAGGGAAATAAAATAAGTTTGCTAGTGAAAGTAAAATAGTAAAATAAGAAAGTGAAATTGGGCTAAGTAACAAAATCTAGTTGTTATACCATTAGAGCTATTTGCTTTCATATAATGGTTGGTTACAATATCCCAAAACCTGATTGCTGGAAGATAAAAATAATAACGTAGAGCAATAGTAGAGTATATTTGTTGCACACAATCCCACGAGCGCTGGAACTGTCGCTATGCGGGAGGGGGGGTATATTCGTCATTTGTATCCTAAGCGGGGAAGCTTCTCCGTAAGGGCGATGCCTAGGCTAGAGGACAGTGCCGCCTCTGCACTGCACTGCATTGCTTTTCACTATCACCGCTTCAGCCCATCCGCCATTAACGCTCCCTCCATTCTGAGCAAAGACGGGACTCTCCCTAATCGTAGTCCCTACTTTTTCTTTTATGCTTGCCTGCTTTTACCGATTCTCTTATTTCTCTAATCGACACCAATGGTTTCGTTAACCGGTTCCCAGATCCCTCCGTCCCCACCCTCGTGCTCGATCTCAACCAGAATCCACTGGTCCTACGGGCGCTCCATGCGAACCATCCGATCCAATCTTTTCCAGAGCGAACGGGCCGAGCGATCACCGGAGGCGAACTCCGCTTCCGTGTCTGAGATTTTGACGGATTCCGCCATCGATTTCCGTCTGAATGAGCTCGCGGCCGGGTTCACGGCGAAACCCCTTTCGCAAGACGGCCCGACGGAACTCCTCGAACTCTCCATCGATTTCTCCGACTTTTCCAGCTTCAACTCCGACATCTCCGGCGAGCTTCAGCGTCTGGCTTCTCTTTGTGACGACAGCTCCCCTCACAGCGTGCTGCAAGATCCGGATCGGGCGGATCTCAAAGCCGACGACGAGATTCTCGGCATCTCGTCGACGGAGGAGGCGGGGCCCGTGGTAAGATCGTGCTCTGAGACGCTGCTGAGCTCGTCCAGCTCAATGGAGTCGAAGCGCGGCGCGGCGGCGAAGATCCGTCTTCTGGCCAAGCACCGGTCCGATTTTCGCGAGTTGATAGGCGTCTCGGGCGCGATCCAAGCCCTAATCCCCCTGCTTCGCAGCGCCGATCCAGCCGCTCAAGAGAACGCCGTCACCGCCCTGCTGAACCTCTCGCTACAGGGGCCGAACAAAGCCCTAATCACAAGCGCCGGCGCCATCAAACCTCTGGTGCACGCTCTCCGGACCGGCACGTCGACTGCAAAGCAGAACGCGGCTTGCGCGCTGCTGAACCTGTCGATGATAGAAGACAACCGAATCACGATCGGCGTGTGCGGGGCGATTCCGCCGCTGGTGTCGCTTCTGGTGAAGGGATCGAGCAGGGGGAAGAAGGACGCACTGACGACATTGTATAAGCTCTGCACGGCGAATCAGAACAAGGAGAGGGCGGTCAGCGCAGGCGCGATTGCGCCGCTCGTGGGCCTGGTGGGGGAGCGCGGGGGAGGAACTGCTGAGAAGGCGATGGTGGTGCTGAGCAGCTTGGCGGCCATTGGAGAGGGGAGGGAAGCCATTGTGAGCGAAGGAGGGATTCCGGCCCTCGTCGAGGCCATCGAGGATGGGCCTGCCAGGGGGAAGGAGTTCGCTGTCGTCGCTCTGCTTCAGCTCTGCGCTGATTCCGTCCGTAATCGAGCCCTGCTTGTGCGTGAAGGCGCCATTCCGCCTCTCGTCGCCCTCTCACAGTCGGGCTCCGCCCGCGCCAAACACAAGGCTGAGACGCTGCTGGGATATCTGAGGGAGCCCCGCACGGATGTTTGCCGCGAATCTCAACGGCTGATTGTGTGCCAGGGGTCCTTCGCTTGACACGTGGATGCCTTATGGTCGTTTTTAATGGACTCGCCAGTGTGCTTCTTGGGGTGTAAATATGTGTCAAGTGCGTGTGATGTGTGGAACGAACTCTTGCTTCCTCACCGGTTATTTTAGCCAGTGCTGGATCGTGTGGCTGGGATTTAATGGTTAGTTTTTCTTCAGAAAATATCGAACGGTTCATGGAGAGACTGCTAGCTTCTGCTTACCTTCGATTCGGTTTCCGAGTAACTCGACCGGATTTACGGTTCAATTACCATGACTGCCCGGTTCGTAGTTTTTTTTATTTTTGGTTTAATAACACCTTGTGTAGTTGCGTGCAAAATATGTAATATCAATTTGAGCTTTAGAAATCATTTATTTATCTTGCTTTTATATATATATATATATTTTTTTTGTGCTTACAGTCGTGGGATTTGAACCTATGACTGGAAGAAATTTTTTTATAAAGTTGTATGAATTAAGGAACA

Network for GWHGAAEX003242

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00514.22	Arm	183	221	8.60E-08
PF00514.22	Arm	225	262	1.30E-05
PF00514.22	Arm	266	303	1.90E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	39.640
SRP064423	SRR2545915	Juvenile tuber	50.170
SRP108465	SRR5643513	five period of Gastrodia elata	25.830
	SRR5643514	five period of Gastrodia elata	23.740
	SRR5643515	five period of Gastrodia elata	21.240
	SRR5643524	five period of Gastrodia elata	18.490
	SRR5643525	five period of Gastrodia elata	41.430
	SRR5643528	five period of Gastrodia elata	22.600
	SRR5643658	five period of Gastrodia elata	38.150
	SRR5643659	five period of Gastrodia elata	68.290
	SRR5643660	five period of Gastrodia elata	81.570
	SRR5643661	five period of Gastrodia elata	78.270
	SRR5643662	five period of Gastrodia elata	67.670
	SRR5643663	five period of Gastrodia elata	62.510
	SRR5643664	five period of Gastrodia elata	84.100
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	50.240
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	28.530
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	51.470
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	48.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	46.340
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	44.070
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	44.590
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	49.030
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	34.830
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.200
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	34.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	34.540
SRP279888	Gastro	Gastrodia elata tuber	81.40
	Juven	Juvenile tuber	36.31
	Mother_Gastro	Mother tuber of Gastrodia elata	23.55
	Mother_Juven	Mother tuber of Juvenile	14.03