Gene detail

Detail information of GWHGAAEX003249/evm.TU.scaffold_130.117

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|17227979\|ref\|NP_484527.1\|	4.00E-157	GTP-binding protein EngA [Nostoc sp. PCC 7120]
KOG	KOG1191	0	Mitochondrial GTPase
nr	gi\|359478737\|ref\|XP_002282837.2\|	0	PREDICTED: uncharacterized protein LOC100260310 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9TLX6\|MNME_CYACA	3.00E-12	Probable tRNA modification GTPase MnmE {ECO:0000255\|HAMAP-Rule:MF_00379}
trEMBL	tr\|W1PP54\|W1PP54_AMBTC	0	Uncharacterized protein {ECO:0000313\|EMBL:ERN11782.1}
TAIR	AT3G12080	0	GTP-binding family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000129	2214642	2265918	+

Transcript Sequence
>GWHTAAEX003249 GTCGCAGACATGGCATATTACACCCAATTTTTTTTACATAAGATATTTGACATAAGAGCAGCAGCGTCTTCCACTTGGGCCAATGCTCTCTTCCGCTGCTACCCAACTTCGCCGTGATCCAAGCAAAGCTTGGGACATCATCGCATTTTGCTTTCCGCAAGAAACCGGGCAGTCTGTCAATGGCCTCATCTCCACTTCGTCCACCTCGCTGCTCGTTGCATTGTTCTAGGTTTCCGGAATCCCCTTCCGGGTCTTTCGTTTCTTCGACCCGTTTCGTTCAGTTTATCTCTGCAAACCATGGGCCTACTCCACTCCCTATGCCTACCTACCGCTCTGCCGCTGCCCTCTCCTCTTTCCATCAACTAGTTGCTCGTCATAGGATGCCATCTATATGTACTTTTTGCTATCGGGATTCTTTGGATTTCGAAGATATGAAAGGAGATTTTGAGGGGGTTCTTGATGATGAAGGAGTGATGGAAGAAGACGAGTTTAGTGAGGATGAATTCTCCGAGCTCGACTTCGCTGAACTGGACGAAGTGGCGCGCCGTGCTGCTAGAAATTATTCCATGTCCTTGTCTCAAGAACTCGGCTCAGAGGATGGCGCCTTTGAAGAGAAGGAAGACGGCTGTCAGGAGAAGAGAGCTTTGAGCAGACATATCCCCGACCATCTTCTCCCCAGAGTAGCAATAGTTGGAAGACCAAATGTTGGTAAATCTGCATTATTCAATCGCCTTATTGGGGGGAACAAAGCAATTGTTTTTGATGAACCTGGTGTTACTAGGGATCGTCTGTATGGTAGATCTTTTTGGGAAGACTCTGAATTTTTGGTAATAGATACTGGAGGTGTAATGACCTTTTCAAAATCACATGATGATGTAATAGAGGAACTAGCAATTACAACAACTATTGGTATGGATGGAATTCCTCTTGCTTCCAGGGAAGCAGCTGTTGTGAGGATGCCTTCAATGATTGAGAAACAGGCTGCCATTGCTGTGGAGGAAGCGTCTGTTATTATATTTCTTGTAGATGGAAAGGCTGGGCTAACTGTGGCTGATGAAGAAATAGCAAGTTGGCTGCGTAAGAACTATTCAACCAAGCCTACCATCCTTGCTGTTAACAAGTGTGAATCTCCCAAAAAGGGTGAAATGCAAGCATCAGATTTTTGGTCCTTGGGGTTCACTCCTCTACCAATATCTGCTATCTCAGGCACTGGAACAGGTGATCTGCTTGATTTTGTTTGCTCAAAACTACAAACAATTGAGGATTTTGAGAACATTGAAAAGGAAAACAATTATGTTCCTTCTATTGCCATTGTCGGGCGACCAAATGTTGGGAAAAGTAGCATCTTGAATGCTTTAGTCGGAGAGCACAGAAGCATTGTCAGCCCAATAAGTGGAACCACCCGCGATGCTATTGACACTGAATTCAGTGCACAAGATGGACAGAAATACAGGCTTATTGATACTGCTGGAATTAGACGAAGGGCAGCAGTTGCTTCATGTGGTAACATGACTGAGGCGTTATCTGTGAAACGGGCATTTCAGGCCATACGACGGTCCGATGTGGTTGCACTTGTTATTGAAGCAATGGCCTGCATAACAGAACAGGACTACAGAATTGCTGAAAGAATTGAGAGAGAAGGTAAAGGTTGCATCATTGTTGTAAATAAATGGGATACAATACCCAAGAAGAAACTAGAAACAACTGCCCATTATGAGCAAGATGTGAGAGAGAAATTGCGCTTGCTTAATTGGGCGCCAATTGTTTATTCGACTGCAGTTAGTGGCCATAGCGTTGAAAGGATTATTGATGTTGTTGGAGTGGTTGAAAGAGAGAGATCTAGAAGGCTGAACACATCCATTTTGAATTATGTGGTACAGGAGGCAGTGTCCTTTAAACCGCCCCCAAGGACAAGAAGTGGGAAGCGAGGACGCGTTTATTATAGTACCCAGGCTGCCACTCGTCCTCCAACCTTTGTTTTCTTCGTTAATGATGTAAGACATTTTTCTGATACATATAGACGTTATATGGAGAGGCAGCTGAGATCAAATGCAGGTTTTCCGGGTACGCCAATTCGGCTACTTTGGCGCAGCAGAAGGAAAGGAGAAACGGATTGCAGAGCTGCAGATAGGGGGAAGAGGGCTTCTCTTCTCCGAGATACTGAGAAGCCTTCTGTTATAATCCAGCCTCAGCTGAATGGTAAAGGAAAAAGTGATATATTTGTTCATAGGAATCGGGAGGGGAAATCTCGGGATTCAAGTCAGTGTTAGGTATTTCATGTGAACTATATAACTATATATATATTATATACATACCCGTGAAGACCTGAATTTTTTTGAGTGGAAAGGTGAGGTCTTAATGGGTGTCAGATTTTTTTCTTAATGTATTTTTATTGTGCTCAGTTCTTTCAGTAAATCTTAATGTTATATTGAGCTCAATGAATACTATTGTAGCCCAGCAGTTGGGGTTCAAGATTTATTATTCTAGATCATGGATTTAAATCTGACTGATCACACATAAACAAAAAGAAAAATATATAAAATTATCAAAATTTTATATATTTTAGGCATGACTGTAGCTTTCTTTTCTACTCTTTAGTTCTCTTTAGTCAGATTGAACTTGAACTCAAGACATCAGTTCGATTGGAGTTGGCTTGATTGTAAGTGAT

Network for GWHGAAEX003249

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01926.22	MMR_HSR1	167	314	2.80E-23
PF01926.22	MMR_HSR1	376	497	2.20E-25
PF14714.5	KH_dom-like	556	637	8.20E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005525	Molecular Function	GTP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.120
SRP064423	SRR2545915	Juvenile tuber	10.620
SRP108465	SRR5643513	five period of Gastrodia elata	6.010
	SRR5643514	five period of Gastrodia elata	5.310
	SRR5643515	five period of Gastrodia elata	5.370
	SRR5643524	five period of Gastrodia elata	6.330
	SRR5643525	five period of Gastrodia elata	6.790
	SRR5643528	five period of Gastrodia elata	5.800
	SRR5643658	five period of Gastrodia elata	9.010
	SRR5643659	five period of Gastrodia elata	6.830
	SRR5643660	five period of Gastrodia elata	7.160
	SRR5643661	five period of Gastrodia elata	7.150
	SRR5643662	five period of Gastrodia elata	7.470
	SRR5643663	five period of Gastrodia elata	7.830
	SRR5643664	five period of Gastrodia elata	8.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.630
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.380
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.970
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.450
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.610
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.040
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.680
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.870
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.370
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.560
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.560
SRP279888	Gastro	Gastrodia elata tuber	9.27
	Juven	Juvenile tuber	7.40
	Mother_Gastro	Mother tuber of Gastrodia elata	5.38
	Mother_Juven	Mother tuber of Juvenile	6.53