Detail information of GWHGAAEX003250/evm.TU.scaffold_130.118
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-139 | FOG: PPR repeat |
| nr | gi|743820718|ref|XP_010931854.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Elaeis guineensis] |
| Swissprot | tr|Q9LS72|PP261_ARATH | 5.00E-140 | Pentatricopeptide repeat-containing protein At3g29230 |
| trEMBL | tr|M0T8A3|M0T8A3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P19050_001} |
| TAIR | AT3G29230 | 2.00E-139 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000129 | 2266789 | 2268777 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003250
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 80 | 128 | 4.50E-11 |
| PF01535.19 | PPR | 156 | 178 | 0.5 |
| PF01535.19 | PPR | 184 | 212 | 1.90E-08 |
| PF01535.19 | PPR | 215 | 245 | 0.046 |
| PF13041.5 | PPR_2 | 275 | 322 | 1.10E-09 |
| PF01535.19 | PPR | 348 | 376 | 0.0021 |
| PF01535.19 | PPR | 379 | 408 | 1.20E-06 |
| PF01535.19 | PPR | 416 | 441 | 0.3 |
| PF01535.19 | PPR | 451 | 475 | 0.019 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.390 |
| SRR2545915 | Juvenile tuber | 2.470 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.400 |
| SRR5643514 | five period of Gastrodia elata | 4.550 | |
| SRR5643515 | five period of Gastrodia elata | 2.920 | |
| SRR5643524 | five period of Gastrodia elata | 3.950 | |
| SRR5643525 | five period of Gastrodia elata | 1.710 | |
| SRR5643528 | five period of Gastrodia elata | 1.040 | |
| SRR5643658 | five period of Gastrodia elata | 1.590 | |
| SRR5643659 | five period of Gastrodia elata | 2.950 | |
| SRR5643660 | five period of Gastrodia elata | 4.270 | |
| SRR5643661 | five period of Gastrodia elata | 3.880 | |
| SRR5643662 | five period of Gastrodia elata | 4.120 | |
| SRR5643663 | five period of Gastrodia elata | 3.760 | |
| SRR5643664 | five period of Gastrodia elata | 3.370 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.790 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.420 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.620 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.980 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.870 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.840 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.470 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.790 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.790 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.32 |
| Juven | Juvenile tuber | 3.37 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.04 | |
| Mother_Juven | Mother tuber of Juvenile | 2.57 |