Detail information of GWHGAAEX003255/evm.TU.scaffold_130.123
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672164174|ref|XP_008801955.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Phoenix dactylifera] |
| Swissprot | tr|Q9LTF4|PP429_ARATH | 0 | Putative pentatricopeptide repeat-containing protein At5g52630 |
| trEMBL | tr|C5XF76|C5XF76_SORBI | 0 | Putative uncharacterized protein Sb03g029620 {ECO:0000313|EMBL:EES01176.1} |
| TAIR | AT5G52630 | 0 | mitochondrial RNAediting factor 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000129 | 2287244 | 2289774 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003255
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 88 | 116 | 0.13 |
| PF01535.19 | PPR | 161 | 188 | 0.003 |
| PF01535.19 | PPR | 264 | 290 | 0.00027 |
| PF01535.19 | PPR | 293 | 319 | 0.81 |
| PF01535.19 | PPR | 328 | 357 | 0.92 |
| PF01535.19 | PPR | 365 | 388 | 0.068 |
| PF01535.19 | PPR | 434 | 459 | 0.93 |
| PF14432.5 | DYW_deaminase | 465 | 588 | 1.30E-31 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.070 |
| SRR2545915 | Juvenile tuber | 1.770 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.920 |
| SRR5643514 | five period of Gastrodia elata | 3.420 | |
| SRR5643515 | five period of Gastrodia elata | 2.900 | |
| SRR5643524 | five period of Gastrodia elata | 3.300 | |
| SRR5643525 | five period of Gastrodia elata | 2.680 | |
| SRR5643528 | five period of Gastrodia elata | 0.760 | |
| SRR5643658 | five period of Gastrodia elata | 0.860 | |
| SRR5643659 | five period of Gastrodia elata | 5.130 | |
| SRR5643660 | five period of Gastrodia elata | 7.190 | |
| SRR5643661 | five period of Gastrodia elata | 7.550 | |
| SRR5643662 | five period of Gastrodia elata | 8.240 | |
| SRR5643663 | five period of Gastrodia elata | 6.000 | |
| SRR5643664 | five period of Gastrodia elata | 8.830 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.790 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.850 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.990 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.860 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.040 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.720 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.870 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.120 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.520 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.610 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.610 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.92 |
| Juven | Juvenile tuber | 6.69 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.71 | |
| Mother_Juven | Mother tuber of Juvenile | 1.94 |