Detail information of GWHGAAEX003256/evm.TU.scaffold_130.124


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|186683149|ref|YP_001866345.1|1.00E-64carotenoid oxygenase [Nostoc punctiforme PCC 73102]
KOGKOG12851.00E-160Beta, beta-carotene 15,15'-dioxygenase and related enzymes
nrgi|702426515|ref|XP_010067867.1|2.03E-169PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Eucalyptus grandis]
Swissprottr|Q84KG5|CCD_CROSA5.00E-162Carotenoid 9,10(9',10')-cleavage dioxygenase
trEMBLtr|A0A059BK70|A0A059BK70_EUCGR8.00E-170Uncharacterized protein {ECO:0000313|EMBL:KCW66100.1}
TAIRAT3G635201.00E-160carotenoid cleavage dioxygenase 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000012922922522351304-
Transcript Sequence

Network for GWHGAAEX003256

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03055.14RPE651353238.40E-37
PF03055.14RPE653284834.60E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0016702Molecular Functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms2.300
SRR2545915Juvenile tuber3.390
SRP108465SRR5643513five period of Gastrodia elata5.070
SRR5643514five period of Gastrodia elata7.740
SRR5643515five period of Gastrodia elata4.990
SRR5643524five period of Gastrodia elata6.370
SRR5643525five period of Gastrodia elata1.380
SRR5643528five period of Gastrodia elata2.070
SRR5643658five period of Gastrodia elata1.000
SRR5643659five period of Gastrodia elata1.630
SRR5643660five period of Gastrodia elata1.930
SRR5643661five period of Gastrodia elata2.740
SRR5643662five period of Gastrodia elata2.180
SRR5643663five period of Gastrodia elata1.860
SRR5643664five period of Gastrodia elata2.020
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.190
SRR6049655Rhizomagastrodiae_C368-T10_good_19.900
SRR6049656Rhizomagastrodiae_C368-T07_good_116.230
SRR6049657Rhizomagastrodiae_C368-T07_good_16.770
SRR6049658Rhizomagastrodiae_C368-T04_good_113.880
SRR6049659Rhizomagastrodiae_C368-T04_good_117.950
SRR6049660Rhizomagastrodiae_C368-T01_good_18.460
SRR6049661Rhizomagastrodiae_C368-T04_good_18.760
SRR6049662Rhizomagastrodiae_C368-T01_good_122.050
SRR6049663Rhizomagastrodiae_C368-T01_good_124.420
SRR6049664Rhizomagastrodiae_C368-T10_good_123.220
SRR6049665Rhizomagastrodiae_C368-T10_good_123.220
SRP279888GastroGastrodia elata tuber 3.26
JuvenJuvenile tuber9.80
Mother_GastroMother tuber of Gastrodia elata 5.26
Mother_JuvenMother tuber of Juvenile 8.53