Gene detail

Detail information of GWHGAAEX003259/evm.TU.scaffold_130.127

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1595	CCCH-type Zn-finger protein
nr	gi\|743884550\|ref\|XP_010909716.1\|	PREDICTED: zinc finger CCCH domain-containing protein 24-like [Elaeis guineensis]
Swissprot	tr\|Q10EL1\|C3H24_ORYSJ	Zinc finger CCCH domain-containing protein 24
trEMBL	tr\|A0A096T3F2\|A0A096T3F2_MAIZE	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GRMZM2G180979_P01}
TAIR	AT2G41900	CCCH-type zinc finger protein with ARM repeat domain

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000129	2379705	2383310	-

Transcript Sequence
>GWHTAAEX003259 GTTGCGAGTGGGTTAAATTTCTGGGTCCTTTAATTTGGTTTTCATTTCGCTAGCGTTTCATTTCGCTGCCATTCCGAGACGCAGAGGAGGAAGCTCTCCTTAGTCCTTTTTCTTCCGTCTCTCTCCAACTTCTCTCCTTATCAATTCTTCCTCCCCTTGCTATTATACCATGATTATAACTATTCTAGCTGCCAGGTCTTCTTCTTGATTGAATTGATTGATCTTAGTGGAGCTAAGAGCTTAACAGGTTTTTGGTGAAGGATCTATTACTTTACAGTTTTTCTTGAAGATTTGATGGTGTTTTCACTTGGCTTGCGCTGATCCAGTGGAAGATGGAATTTTAATTCTGCTGAATAGAAGCATGTGCAGTGGTCAGTTGCGCAAAAACTGCCCCAATATTTTTTCCTATTTCATTGATAGTTCAAGCTGAAAGATACAACAATGAATCCTTTGATGGCTGACACCAGTGACTCCTTCGCTAGCGTACTGGAGCTTGCGGCCAACAACGACGTGAATGGATTCAAACAATCTGTTGATAGAGACCTATCGGTCATTGACGAGATTGGAGAATGGTATGGTCGAAAAAAAATCATCGAGCAACGCACCCCGCTCATGGTTGCTGCCACTTATGGCAGCCTTGATGTACTCAATCTGATTCTTAGCCTCTCCACCGCCAATCCGAATCTTTATTGTGGCCCGGATAAAGCCACTGCCCTTCATTGCGCCGCTTCCGGGGGTTCTGTGAATGCCTTGGAGGCTGTAAAGATCCTTCTTTCTGCTGGAGCTGACCCGAATTGCATTGATGCTAATGGCGATCGACCAGCTGATGTGATTGTTGTTCCCCTCAAGCTTTCCAATTTGAGGGCTGCGCTTGAGGAGCTTCTTGGAAGTTCGAATGGCGCGGCAAATGAGAACCAGAACCATCACCAAGCTCTCCGGGTGTCTACGAGCGCACCCAACTCTTTTTCTTTGTCATCATCAGTAGAGGATGATGGGTCGCCTTCATCGGATTCAACCTCATCACCTTCCATGCCGGAGAAGAAAGAGTACCCTATCGATCCGTCCCTTCCGGATATCAAGAACAGCATCTATGCAACAGATGAGTTCCGGATGTTTTCGTTCAAGGTCCGGCCTTGCTCCAGGGCGTACTCCCACGATTGGACCGAGTGTCCCTTTGTTCATCCCGGGGAAAATGCTCGGAGACGTGACCCGCGGAAGTATCACTACAGCTGTGTTCCTTGCCCTGATTTTCGCAAAGGGGCGTGCAGAAGGGGAGATTTGTGTGAGTATGCCCATGGTGTGTTTGAGTGCTGGCTTCACCCCGCTCAATATCGAACAAGGCTGTGCAAGGATGGGATTAGCTGCATGAGGAGGGTTTGTTTCTTCGCTCACACTAATGAGGAGCTACGTCCTCTGCACATGTCCACGGGATCAGCCGTGCCTTCTCCCAGATCATCTGTATCAGCTGCAATGGAGATGGCTGCGATGGGCCTAATGCCAGGATCTCCATCTTCTGTTTCGGCTATCATGTCTCCTTTCACACCGCCCATGTCGCCTTCTGCCAATGGCATCTCTCATTCTTCCCTCAATTGGCCACAGCCCAACGTTCCTGCGTTGCACCTTCCGGGAAGCATTCTGCAGTCGAGCAGGCTTAGATCGTCTCTCAGCGCAAGAGACGTGCCTTTGGACGACTACTCCATGATGCAGGATTTCGAGACCCAGCAACTCATCAATGATCTGTGCATTTCTCGCTTCGGCTCTTCTCCAGGAAACCGAACGGCTTGGTCAAAGACGTTGAATTCTTCTAACCTCGACGAGCTTTTCTCGGCTGAGGTTTCTTTGTCTCCAAGATATAGCTCTGATCAGGGAGGTGTTTTCTCTCCCTCACACAAAGCTGCCATTCTTAGTCAGTTTCAGCAGCAGCAAGGCCTGCTTTCTCCCATAAACACTGGCCGGTACTCTCCGAAGGCTGTGGATCAGACGCCCCCTGGGCATTCCTCCCTCTTGCAGGTCTCTCTTGGTTTGCTTTCGCCCGGGAGGATGTCTCCAAGAAGCTTGGAAGCAGGCTCTCCCTCATTGAGCTCACGACTGGCCTCACTCGTACAGATAGAGAAGCAACAGCAGCAAACTCTGAGGAGCGTTAGCTCACGAGAGCTTGGAAGTACAGCAACTGCAGTTGTAGGCTCACCCGTAAGCTCATTGTGGTCCAGGCTTGGTTCATCTTCGAGACCAATTGATTGGGGCATGAATGGTGGCGAAGAGCCAAGTCAGCTTAGGCGGTCATCTTCATTTGATCTCCGTTCCGGGGGAGAAGAGCCTGATGTTTCCTGGGTTCACTCTTTGGTAAAGGAATCAGCCCCCGAGAAACCGGTGGTGACCTCAGCCATGGCTGGACAAACTGCTATCGAAAGTTCAAGCGATCAGGCCGCTGCACTTGGGGCATGGTTGGAGCAGATGCAACTGGATCAATTGGTTGCTTAGCAGAAACTATGAATGCTATTTCTCTACTCAGACTCTTCTCAATGAGGTCTACTATAACTGAATGAATGTTTTGGCAAATAAATTATTTGGATGGAAAACGGATGGGCGGTCAAGATGGGCTGGCGGCACTATTTTGAAGATTCACTTTCTTCTAAAGATAAATTATTTTACTTTTAAGCAGGTTATAGAGAATGCAGGGAGGCTGTGTCTGGGGTCTCAGTTGAATGGCTTCCTTGGACTGTTATTACTCTGCTCAAAGCTGATTTTTTCTTCAGTATCAACACATGTTTCTGCCAATTACTTGTCTTTTGCTCAGGATTTCTTCATCTTTACACTATGAATGAGGTCTTTCTCTGTTGTTAGTAAAGCAGCTTTTGGTTCATGCTGAGAAGGGTAAATATTTTGTCATAATTGTATTTGATTTTCTTGTGTTATTTTGAGAACTGGGTCGGTATTATCTATTATAAGCAAACTGGCTTATTGTTTTGAATTTCATTATTTTTTTTTATTACTGCCATATCCTTTTGTCACTCCGCCGCTTTTATAAGAACTGGTTCAACTTTGTGTGTGTGGGCACATAAGATTTAACTAGAATTGTTACAGTACATAATGATTGAATGCAGCTTCTTTAAGT

Network for GWHGAAEX003259

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12796.6	Ank_2	49	120	1.70E-08
PF00642.23	zf-CCCH	266	286	1.20E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	Molecular Function	metal ion binding
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	26.230
SRP064423	SRR2545915	Juvenile tuber	24.710
SRP108465	SRR5643513	five period of Gastrodia elata	43.160
	SRR5643514	five period of Gastrodia elata	54.540
	SRR5643515	five period of Gastrodia elata	46.620
	SRR5643524	five period of Gastrodia elata	48.600
	SRR5643525	five period of Gastrodia elata	46.820
	SRR5643528	five period of Gastrodia elata	39.460
	SRR5643658	five period of Gastrodia elata	38.910
	SRR5643659	five period of Gastrodia elata	41.460
	SRR5643660	five period of Gastrodia elata	38.000
	SRR5643661	five period of Gastrodia elata	37.710
	SRR5643662	five period of Gastrodia elata	39.260
	SRR5643663	five period of Gastrodia elata	41.010
	SRR5643664	five period of Gastrodia elata	52.190
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	68.180
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	62.660
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	62.190
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	55.610
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	70.920
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	78.850
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	59.620
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	60.190
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	59.370
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	65.450
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	90.630
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	90.630
SRP279888	Gastro	Gastrodia elata tuber	49.72
	Juven	Juvenile tuber	38.03
	Mother_Gastro	Mother tuber of Gastrodia elata	50.23
	Mother_Juven	Mother tuber of Juvenile	39.74