Gene detail

Detail information of GWHGAAEX003262/evm.TU.scaffold_130.131

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|428203430\|ref\|YP_007082019.1\|	ferredoxin-sulfite reductase [Pleurocapsa sp. PCC 7327]
KOG	KOG0560	Sulfite reductase (ferredoxin)
nr	gi\|672181488\|ref\|XP_008810963.1\|	PREDICTED: LOW QUALITY PROTEIN: sulfite reductase [ferredoxin], chloroplastic-like [Phoenix dactylifera]
Swissprot	tr\|O82802\|SIR1_TOBAC	Sulfite reductase 1 [ferredoxin], chloroplastic (Precursor)
trEMBL	tr\|M0T9Z8\|M0T9Z8_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P25020_001}
TAIR	AT5G04590	sulfite reductase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000129	2473727	2489245	-

Transcript Sequence
>GWHTAAEX003262 TAAATTTTTAACGCCGTCAGATAAAAAGATTCCATTAAATCTAGCCTTTGAAAAGGAAACCCCTTTTTTTTTTCAGGGTGCAAATATCATATCATAAGCTGAGTTTTCCATTTTAGTGAGCAAGCAAGCTGTATCTCACCATCTGCTGCTTCTCTTCCGATTGTGCTTCTCCATCGCTTATTCTCTTGTTTTCGTGCTTTCGTTCGTGCTCGCAGACATGACTGCGGTGATTCAGACTGCGAAGGCAGTCGTATCTGAGAAGGAATTGAATGTCCGCTTTAATGTGTACCGAGGGTTAAGATCCTCCGCTGCAATTGCTCCCCTGGGATCAATTCGTGCTTCTCCTGTTGCTTCTTCTTCTTCGAGGTCCGGTTGGATTGTGAGATCCGTTTCCACGCCTGATGTAGCTGTGGCTAAACGAAGCAGTGTCGAATTATTCAAAGAGCAGAGCAACTTTCTTCGATTCCCTCTTAAAGAGGAGCTGCAAACTGAAGCCCCCAACATAAATGAGGCGTCCACCCAGCTGATTAAATTTCATGGAAGTTACCAACAGACGGACAGGGATCAACGTGGCACAAAGGCTTATCAATTTATGCTCCGAACAAAGAATCCCTGCGGCAAAGTCCCCAACAAGCTCTACTTGGTCATGGACGACCTTGCAGATGAATTTGGAATCGGTACTCTCCGTCTAACCACCAGACAAACGTTTCAGCTGCATGGTGTCCTAAAAAAGAACCTCAAGACCGTGATAAGCTCGATCATAAAAAACATGGGCTCTACCCTCGGAGCATGCGGAGACCTGAACAGAAACGTTCTTGCCCCTGCGGCACCATATATTAAAAAAGACTACATCTTTTCGCAGCAGACGGCCGAGAAAATAGCATCTCTTTTGACCCCTCAATCCGGTTCTTATTACGATATCTGGGTAGATGGGGATAAGGTGATGTCAGCCGAACCACCTGATGTGGTTGCTGCTCGAAATGACAACTCCTATGGAACGAATTTCCTGAATTCTCCTGAGCCCATCTATGGCTCACAATTCTTGCCTAGAAAGTTCAAGGTAGCTGTAACCGTGCCTACGGACAACTCGGTGGACATTCTTACCAATGATGTCGGCATAGTTGTAGTCTCTGACAGTGATGGTGAGCCGCAAGGCTTCAATATTTATGTGGGCGGTGGCATGGGAAGGACGCACAGGGTGGAGACTACCTTTCCTCGCTTGGGAGAGCCTCTGGGTTACGTGCCAAAAGAAGATATACTATATGCTGTGAAGGCTATAGTTGTTACTCAGAGAGAGAATGGCAGGAGGGATGACAGGAAGTATAGCAGAATGAAGTATTTAATAAATGAATGGGGAATCGAAAAGTTTAGGAGTGTGGTTGAGCAGTACTACGGGAAAAAATTTGAAGCATTCAAAGAGTTGCCTGAGTGGGAGTTCGAGAGTTATCTGGGCTGGCACGAGCAGGGTGATGGCGCATTGTTCTGTGGGGTTCATGTTGATAGTGGCCGTATTGGAGGCGAAATGAAGAAAGCTTTGAGGGAAGTGATACAGAGATATAATCTAAATGTGCGAATTACACCTAATCAGAACTTGATCTTATGTGATATCCATCAGTCTTGGAAACAACCAATTGCTGCAGCTCTTGTTCAAGCTGGTCTGCAAGAACCAAGCTATGTTGATCCTCTCAACATAACTGCAATGGCGTGCCCGGCTCTGCCACTATGCGCTCTAGCAATCACCGAAGCCGAGAGAGGAGTGCCAGATATTCTAAAACGTGCCCGTGCTGTTCTCGATAAGGTGGGTATTCAACGCGATGAATCAGTGGTAATAAGGGTTACCGGGTGTCCTAACGGTTGCGCGAGGCCTTACATGGCCGAACTTGGACTTGTTGGTGTCGGTCCCAACAGCTATCAGATTTGGCTTGGGGGAACGCCCAACCAAACCAGTCTGGCAAGATGCTTCATGAATAAGGTGAAAATCCAAGATCTGGAGAGGGTGTTGGAGCCGCTGTTCTATTGCTGGAGAAGCAAACGCTTGCCGGAGGAATCATTTGGCCAGTTTGTCAACAGAATTGGCTTTGAAGCTTTACAGGAGACAGTTGATCAATGGGAGGCGCCCGCATGATCTTATCCTCAACATATTCGCTGTGCCAGATTTTTAATAATTACTTGCCCTCGTGTGGAATGAAAGAAATGCTTGGTTGCGCGTCACATTTTTTTTGCTAAATATGTATAGCACTTTCTCAAGTCTTCGTACTAAGGATTTTATGTTTATTTATAGCGCGTTAAGAGATCTAAAATAAATAAACAAATAATTAAAAGGTCTGCTTAAAATATTCAATTTTAATTTCAGCTTTATCGGCAA

Network for GWHGAAEX003262

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03460.16	NIR_SIR_ferr	121	180	1.90E-15
PF01077.21	NIR_SIR	219	396	7.10E-50
PF03460.16	NIR_SIR_ferr	414	477	1.00E-12
PF01077.21	NIR_SIR	492	630	1.20E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00392	sir	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Sulfur metabolism	map00920

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0050311	Molecular Function	sulfite reductase (ferredoxin) activity
GO:0016491	Molecular Function	oxidoreductase activity
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding
GO:0020037	Molecular Function	heme binding
GO:0051536	Molecular Function	iron-sulfur cluster binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	28.720
SRP064423	SRR2545915	Juvenile tuber	31.660
SRP108465	SRR5643513	five period of Gastrodia elata	74.640
	SRR5643514	five period of Gastrodia elata	83.820
	SRR5643515	five period of Gastrodia elata	86.150
	SRR5643524	five period of Gastrodia elata	87.710
	SRR5643525	five period of Gastrodia elata	81.470
	SRR5643528	five period of Gastrodia elata	147.780
	SRR5643658	five period of Gastrodia elata	85.790
	SRR5643659	five period of Gastrodia elata	88.860
	SRR5643660	five period of Gastrodia elata	96.070
	SRR5643661	five period of Gastrodia elata	95.440
	SRR5643662	five period of Gastrodia elata	105.290
	SRR5643663	five period of Gastrodia elata	101.310
	SRR5643664	five period of Gastrodia elata	87.800
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	64.230
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	60.120
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	70.120
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	53.130
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	46.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	49.640
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	52.650
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	51.210
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	67.890
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	62.610
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	84.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	84.230
SRP279888	Gastro	Gastrodia elata tuber	58.42
	Juven	Juvenile tuber	106.13
	Mother_Gastro	Mother tuber of Gastrodia elata	59.85
	Mother_Juven	Mother tuber of Juvenile	80.87