Gene detail

Detail information of GWHGAAEX003270/evm.TU.scaffold_130.139

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4443	0	Putative transcription factor HALR/MLL3, involved in embryonic development
nr	gi\|743884043\|ref\|XP_010909576.1\|	0	PREDICTED: uncharacterized protein LOC105035649 [Elaeis guineensis]
Swissprot	tr\|Q9M364\|ATX3_ARATH	4.00E-07	Histone-lysine N-methyltransferase ATX3
trEMBL	tr\|M0TVA0\|M0TVA0_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P31480_001}
TAIR	AT3G08020	0	PHD finger family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000129	2697401	2718590	-

Transcript Sequence
>GWHTAAEX003270 CCAGTTCTCTCTCTTCCGCTCGCCGAGACCAATAATCCCTAGCGTATTTTCCCCTTATTTTTCCCTTTTATTTTCGGCAATTTTTTTTTCAAATCGAGCTTTGGAGGACAAATCCCCCGCTAAAAAAACCCTCGCGGCCCATCGAATCCGATGGCTTTTCATATCTCTTGCCCGATCACTTGCCGGCAGATATGCTACTGCGAGCTAGGGTTCGCGGGAGGTTTGCGGAGCGAGAAAGCGAGGCGGGGATTTCTCGAGGAGATCGAATCGCTGGAAGAGTTTCTGCGGGATCCATGGATTGTGAGGTTGGATGGTGCTGGGGAGTCAGCTGCGATGGAGACGGTTCAGGTGTTGGTGCCGAAGGTGGAGCCGGCCTCGGCTTCTACCGCCGGCGGCGTCGATGGGGACGACGCCTATTCCATGTCTGCGCATGTTAAGCGCATGGAGCTGCAGCGGCAGGCAGTTGCTGCGTCTCAGGCTGCTGAGGACTATGCGAGGAAGATGGAGATCGTTGGTGCTTCGGATTCTTCTTTTGAGCCGGTAGCAGGTGAAGCAACCATTGATCTCACTAGAGATGATCAGGGTTCTACTGTAAAGGTCATGTGTCGCTTTTGTTTTTCTGGGGAAAATGAAGGCAGTGATAGAGCTTTAAAGATGCTTTCATGCAAATGTTGCAACAAAAAGTATCATAAACGTTGTTTGAGAAGTTGGGCTGAGCATAGAGATTTGTTCCATTGGAGTTCATGGGTCTGTGCCTCTTGTCGCACCTGCGAGGTATGCAGAAGAGCTGGAGATCCCAATAAGCTGATGTACTGTAAAAGGTGTGATGGTGCTTATCATTGTTATTGCCAGCAGCCTCCTCACAAAAATGTCAGCCACGGGCCTTACCTTTGCTCAAAGCATACAAGGTGTCACAGCTGTGGGTCTACAGTCCCTGGAAGTGGTCCTAGCACTAGGTGGTTTTTAGGATACACTTGCTGCGATGCTTGTGGACGACTGTTTGTTAAGGGAAACTATTGTCCAGTTTGTTTGAAGGTTTATAGAGATTCGGAAACAACCCCCATGGTTTGTTGTGACATCTGTGAGAGATGGGTGCATATTATCTGTGATGGTATCAGCGATGAAAAATATCAGCAGTTCCAGACAGACCAAAACCTCCAATATGTTTGTGCTGCATGCCGTGGTGATTGTTACCAGGTTAAAGATATCGATGATGCTGTTAGAGAGCTTTGGAATAGGAGAGATGAAACTGATCGTGGTCTTATTACAAGTTTGAGGGTTGCTGCAGGCCTTCCCATTGAGGAAACAATATTCTTAGCTATGCCCTATTCTGAAGACGAATCAAATGGTCCAGTAGTACATCGAAATGCTCATGGAAGATCTTTGAAATTTTCTGTTAAAGGCATAAGTGACAAATCAACTAAAACCTTAAAAGACTCGGGGAAGAATAGTACCAAAAATTTATTATCTAATAAGAAATCTGTTAAAAAGAAAGAATGGCAGTTAAAATTTGTTAGTAAAGCAGATGGTCTGTCTAGTAATCATGAAGAACATCATGAGATGTTACCAGCAAATAACCTGAATGATTCAACTCATGATGATTTCGGATCATATAAAGCTGATGAACAAGAGAGTCCTTCATCACCAAGTACTGGAGTTGCTGGTGATAATGCAACTAATTTCTCAGATGCTAAGATGGAACGTAACATTAACATATGTGCAAATGAAGATCAAGGTAACCCTTCTGATAGGGTAATCAGGATTCCAAATAAACAGCTACCAGATAGTCATTTTAAGGAATGTGCTGGTAAAAACTCATGCAAGACTGAGGCTATTAAAGGGACTAAATTGGTCATACATATTGGTGGAAGAAACAGAAATGCTACAAGCTCTCCAATGTCTGAGAGTTCAAGCTGTCAAAGAGATCAAGATTTATCTACCTTTCACGGCAGTGAATCTAACTGCCGTGGAAAGATGGAAAATATCAAGAATGGTTTTTCTAGGGTTCTTATTGAAGGTGTTAGTGGGGAAGGAACCATGCAAGATAATACTGACCAAATAAGTATTTTAAAAAAAGAAGGCAAAATTAAAAGTGCTGTAAGGCCTGGAAAGGATTCTGATTTGCATAGAAAAAATAATGGCAACATAATGGAAGACAGTGCTTTAAGGAACTCATTCAAAAGGACAATACTTAGGAAAAAGAAATCTGAGGTTGACTTGGCAGATGAGGACGCAAGGCTAAGGAATGATGATGCTGTCCCCGTGAAACATCCAGTCAAACACCCTGCACTGGCCAATGACATCTTACCAGTAAAAAGCATTTCAGGCGCCTCAAGTGAACTCAAGCCCTTGCTAAAATTGAAATTCAAGAATCCTTATTTTGAACATAGAAGTTCTTGGGCTTCACGGGGAGAAGAAGAGAACCCTGTGAAAGGACATAGATCAAAACGAAAGAGGCCTTTTGTGGATAAAATTTCCGTACATGAACACGAGGGCCCAACAAGACCTCATTGTGATAATCAAATAGATGAAGCAGTAGATACAAATTGGGTACTGCGTAAACTTGGTAAAGATGCAATTGGGAAAAGAATTGAAGTTCAGCAGAAATCAGGTGATTCTTGGAAAAAGGGGGTAGTCTCAAATCTTATTGAAGGCACTTCATCTGTGGCCGTCCATTTCGATGATGGAAGATCCATGAATTTAGAGCTGGGGAAGCAACGCATTCGTTTTATTACCCAGAAGAACAAAACAGCAGCAAAGACTTAAATGGCAAATGATTTTACGAATGTCTAAAAGCTGCTTATCACTGTGAATATTATTCCCGGAGAGTCATGAGCTCCCCCCCATTATCAGAGTGCCCAAGCTTGGCAAACCTGTCTATACAGAAGATAAAAGGCTTACTTGCATTCCCCCTGAAAAAAAGCGCTTTTGAAGAATCAGATAACAAAAAGCTTTCTGAAAAGCACTTTTTTGGGTTCTGCTGTGACCGCCGAATGGCAAAATATTGAAGAGTTTTTCCTTTTTCTATAGTTGGCTCGGCTATCATATGTTAGAGTGATATTGTTATGGTAGTACTAAGAACTGCTTGTTTCAGGGGAGTTTCCCTTTCATCATTCCTTTGTGATGATCGGCACCCGAGATAAGGCTTTTCTGTTCCTATAAACTAACAATAACTAACAATAATTAGTTGCAGCTTTTCATCATTCATTTTTAAAAAGATTGTTTCTTTGAGAATGGGGAAATTGCTTTTTGGTTACTGATGAAATTCAAAACATATATCTGTGCTTCTCTGCAAGTGCTTGAAAGTTGGCAGTTAAGGGTACTGCAAAGTGCTCCCTTTTTCCCTACTGACTTGTTACGTGCACAAATATATACATTCCCA

Network for GWHGAAEX003270

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00628.28	PHD	289	344	6.60E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.510
SRP064423	SRR2545915	Juvenile tuber	6.850
SRP108465	SRR5643513	five period of Gastrodia elata	6.580
	SRR5643514	five period of Gastrodia elata	6.740
	SRR5643515	five period of Gastrodia elata	5.930
	SRR5643524	five period of Gastrodia elata	6.970
	SRR5643525	five period of Gastrodia elata	5.680
	SRR5643528	five period of Gastrodia elata	6.120
	SRR5643658	five period of Gastrodia elata	5.710
	SRR5643659	five period of Gastrodia elata	5.690
	SRR5643660	five period of Gastrodia elata	6.040
	SRR5643661	five period of Gastrodia elata	5.800
	SRR5643662	five period of Gastrodia elata	5.210
	SRR5643663	five period of Gastrodia elata	4.840
	SRR5643664	five period of Gastrodia elata	4.780
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.410
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.230
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.960
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.800
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.170
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.880
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.070
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.680
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.750
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.430
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.300
SRP279888	Gastro	Gastrodia elata tuber	6.31
	Juven	Juvenile tuber	14.58
	Mother_Gastro	Mother tuber of Gastrodia elata	9.39
	Mother_Juven	Mother tuber of Juvenile	17.26