Detail information of GWHGAAEX003273/evm.TU.scaffold_130.141
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383459745|ref|YP_005373734.1| | 4.00E-24 | sodium/hydrogen exchanger [Corallococcus coralloides DSM 2259] |
| KOG | KOG1650 | 7.00E-127 | Predicted K+/H+-antiporter |
| nr | gi|326502038|dbj|BAK06511.1| | 0 | predicted protein [Hordeum vulgare subsp. vulgare] |
| Swissprot | tr|Q8L709|CHX28_ARATH | 8.00E-147 | Cation/H(+) antiporter 28 |
| trEMBL | tr|F2EGN9|F2EGN9_HORVD | 0 | Predicted protein {ECO:0000313|EMBL:BAK06511.1} |
| TAIR | AT3G52080 | 7.00E-127 | cation/hydrogen exchanger 28 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000129 | 2779031 | 2784588 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003273
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00999.20 | Na_H_Exchanger | 43 | 433 | 6.30E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006812 | Biological Process | cation transport |
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0015299 | Molecular Function | solute:proton antiporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.110 |
| SRR2545915 | Juvenile tuber | 0.190 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.710 |
| SRR5643514 | five period of Gastrodia elata | 0.690 | |
| SRR5643515 | five period of Gastrodia elata | 1.330 | |
| SRR5643524 | five period of Gastrodia elata | 0.920 | |
| SRR5643525 | five period of Gastrodia elata | 0.890 | |
| SRR5643528 | five period of Gastrodia elata | 0.560 | |
| SRR5643658 | five period of Gastrodia elata | 1.980 | |
| SRR5643659 | five period of Gastrodia elata | 0.380 | |
| SRR5643660 | five period of Gastrodia elata | 0.490 | |
| SRR5643661 | five period of Gastrodia elata | 0.420 | |
| SRR5643662 | five period of Gastrodia elata | 0.440 | |
| SRR5643663 | five period of Gastrodia elata | 0.160 | |
| SRR5643664 | five period of Gastrodia elata | 0.220 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.730 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.730 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.930 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.600 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.980 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.970 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.580 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.780 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.930 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.930 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.08 |
| Juven | Juvenile tuber | 2.20 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.93 | |
| Mother_Juven | Mother tuber of Juvenile | 1.46 |