Gene detail

Detail information of GWHGAAEX003276/evm.TU.scaffold_130.145

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672168674\|ref\|XP_008804345.1\|	0	PREDICTED: protein TIME FOR COFFEE isoform X4 [Phoenix dactylifera]
Swissprot	tr\|Q94KE2\|TIC_ARATH	2.00E-134	Protein TIME FOR COFFEE
trEMBL	tr\|M0SQQ5\|M0SQQ5_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P20920_001}
TAIR	AT3G22390	2.00E-66	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000129	2808604	2815343	+

Transcript Sequence
>GWHTAAEX003276 ATGGGAGATGATGGACTTGACTGGCCCCGCGCCGAGGGGCAACCGGCTGTAGCCCGCGTCGGGCGATTCCGCTTTGGGCAAGTTAGGGTACGATTGGACACGTGGAGGCTCGGTGTCTGCCGAACCTCACCCACGGACGGCTTGATTGCTCTCCACGTTGGTACCGCAGAGCATTCGCCGTTTGATTTGAAGGTAATCGAACGGGCCGCAGCTAAAGAGGAGGATGGAGCGATGGAGATGCAGGAAACCTCTCGGCTTCGGGATCGTGGAGGAAAGAAGGATAGAGATCGGGACAGATCTGGTCGGAACAAGAGGAGGAGGGGTGATAGGATGCTGCATGGAGGTCACAGAGAGGAGGGAGAGGACAGTTCGGAGGATAGTGTTGATGAGGATGATGATGATGAGGAAGATGACTCCTCGGTAGCCGTTCGTCTGCCTCCGCCGCCAGTTCCAAGTCCAACTCCATCGGTGTCCGGGATGCAAGCACACAATATTCGGAAAGGCTATCCGATTAAACAGGTAAGACCGCCTGGGACCGGCTCTTGGAAGGTCGTCGAGGAGATGATAGGTGCTCCCATACCACGGAAAGCGCGCTCATCATCTGTGAAAAGGTCACAAGAATGTTGGGTTTCAGGTGGAGGCGGAAGTTGCAGTGGCGGTGGAGATCAGATTTCTCGGCAAGCATCGATGTCTCCGGCGAGACCAAGTCCTTCATCCACCACTGCTCCGGTTTCGCCTACATCGTCTAATGTCTCAGTTCGGAAAAAAATGAAGCCGATCAACGTTCCAAAGCATAGGCCGCCTAAAACTTCAAAGTCGTCTTCTATTCAAGAGATTGAGATCGAGGTTGCAGAGGTCCTGTTTGGAATGACGAGACAAGTGCCTCCAAAGCAGGAAGAACACAAACACGATCTCAAGGAATCCAATGGATCCGGCAACGAATTTAAATCTAGCAGGGTGTCTTCCCCAAACCCGATCTCTCCTCCCGCAAATTCTCAACCATCTTCCACCATTCGCCCATCTAATCCCTCCTCCAACTCGTTTCCGTTGACTGCAACTGCGCCCAAACGAAAGCGACCTCGTATGAGATTTGATGAGGAAAGCGCTACCAGCCCTCCGAGCTCCACCGTTCTTCCCTCTACTTCCAGCTCTTCTGTAGCCAAGATGGACACTGAGGTGATTCCATCTACTGCAGGAGCAAAAACTGATCCCCTTTCACCCAGATCGGAGAAGAACGATTCTACTCCGGTTGAAAACGGTGGCAGCTTCACTGACCCGCCAATTTCTAATGCTACTTCTGCCGTAGTTTTTACTGCTAATGCTCAGCAAGACTGTGTCAAATCAGAAAATATCTTGGATCTGAAGGACTCAGAGACAAGGGACAAGGAGGAGGCCTTCCCTCCGCCTAAAGAGTCTCCTGCTGTCAATTTAGATGCCGCCATCGAAGAATCATCATCTGCAAGCAAAGCTGCTATGCTTTCTGATATGCAACAACGAGAAGAGAAATTTAGTATCGATCTTATGGCTCCTCCTGGAAAATCATCTATGGAGATAGAAAGCAACTCGAACTATGCTTTAGAACCCGTGGAGACAGAGAATACGCCCAAACCGGAGGCTTCAAAAGCCGAAGCGGAGAAAATTGAGAAAAAGCCTAAAACCGAGCCGGGAGAAAATGTTCCGGAGGATAAGAATGGCAGAAAGCCGTCAACCGACGGCTCTGATTCGAGGAAGCATGCCGGCAAGGAGAGAGATCTTGATTTGCAGCTTGATTTGGAGAAGCTTGATAAGGACGTCAACGGTGCCAATAAGAGCCAAGTCCTGAAGCAGCAGCAATCTAAGGTCCCAAGAGCTGACCCTCCTAATAAAACTGAAAAAGCTGGTCCGACGGCATCTTTGCCAGTGCCAATGCAGATCACAGGTTGGCCTGGTGGTTTTCCTCCTTTTGGGTTTATGGGTCAAGTCCCTCCTTTGCCTCCTGTTGTCTCTGTGGATGGGAGCTCAAATTCTTCTAAGCAGAGCTTCGTTCCTTCACAACTTCGGCCAAAACGCTGTGCAGCTCATTGTTATATTGCACAGAATATACACTATCATCAGCAGATTACGAGATTGAATCCATTCTGGTCTTCAGGGGCAGGGCCGACGCCTATATATGCACCCAAACAATATAATTTGAATACTGCGCCGCCTTCTGATCCGACGATCCTTGGCAGTTCACCTGCTGCAAGGACTTTGGGTTCTGCGCAAGAAAAAGTAGGCTTGCCCGTGTCCGCCCCGCAGTCCTGCGTTCCTGCAAAGGATAAGAGTAATGCATCATCTCAATTCGCCGCTGATGTTTCTCAGAGGAAGCCGTCCACTCTGCAGCAATCCTCACAGCCTGGTTCAGGCAGCAACATGCTTGCTCCTGCTTTCGTATTTCCTCTCAATCAGCAGCAAGCTGCGGCTGCTGGGACTGCTGTTGCCGCCGCTCATCGACCAGGGATTGCAAAGCTGCCGCCTGGTTCTGGCTGCACAGCTCAATCGTCGAGCGGCACCGGTTATGCCGCAGTGGGATCTTCCGGAGCTAATGGGTCTGGAACTAATATGAGTTTTAACTACCCTGGTTTGCCATCCCATGAAGCTCAATATCTTGCTTTTCTTCAAAACAATGCGTATTCATTCCCTATTCCAGCTCATGTTGGTGGAGCTCCGCCCTATAGGGGGGCAAGTCCAACACAAGCCATGCCTTTTTTCAATTTGTCATTTTACCCCTCCCAGATGCTTCACCCTTCTCAGCTCCGGTTGCAGCAGCAACAACCGCAATCCTCACAGCAGCCGCAGCAACAGAATCCACCGCAGCTTCCTTATTCTCAGCAGGGGCATCAGAATCCAAGCACTTCCAGTGGCTCTTCTTCATCACAGAAGAATACTCAACAATCTCAGAGGGTTCCTCCTGCTGTTCCTATAGGGACTTCCCATGGCTGCTTATCTTCCTCCAAGCAGCAGCACCTGCCTCCTTCGGCTCGGCAACTGGACTCTGAACCTGTAGGAGAGGATGCCCCATCAACTGCTGATAGCCGGGTTTCTCAAGCTCAGAAGAGCATCTATGCTCAGAAGTTTGCAGTTTCTGCTCACTCGCAGAATTTTGCCCTGATTGCTCCTGCTGCGGTCAGCAGTCATAGCGAAAAGCAGCAGCAGCAGCAATCGCAGAACCAGGTTATGAAGATGGATCTTACGCCTTCCCAAGCCTTCGCCATGTCGTTCGCCTCCTTCGGTAGCGCTGGAGCCTCGGCAGCAGCGACTGCTGGAGCTGCTCCTCATGGCCTTGACTTCTCTTCTATATCACAAAACCACGCCTTATTCCAGTCCCTCCCTGAAGCGGCACGTCACAGCTACCAGGTCTCAGCCGCCGCCGCCGCAGCAGCTGTTCATTCTGCACAGCAGCTACAGCAGAATAAAAAACTCGAGGATGCGAAATCCGCATCTGAAACCGGCGTAATTTGCGAGGAGACGAAAATCTCGTCCACAGCCAAGGCATTGGCAAATGCACAGCAACATTCCCTCACCTTTTCACGCGGCGATGCCGACTCTCCCATATCTTCGATTCTCACAAACAGTGTGATGGATGGTTCCTCTCGGACACTAAACCTCATCCAGCCTCCCATCGTCGGAGCTCCTCGTGCCTCCAGCCGTCCGGCCAGCGCGGTGCCATCATCAAATTCTGTCACAAATCCTGCACATTTGCTCCCCCAACAGCATCAACACCAGGTTCTTCAGCTTCAAAAGCAGCATCAGCAGCTTCAGTTACAGCAGCAGCTTCAGCAGCATCAGAGGGCAAAGTCTGCCTCCTCCCACAGCAATGTCAACATCTACACGGACCGCCTGCCCGTAAGCTCAGCCTCCTCAAAGTTCCCCCAAGGTCTCGCCGGCTTTCCTCCGGCCCTCATCCAGAGCAGCGCTAACTCGCAGAACGCCTCGCAATGGAAGGCTGCGACCAGAGCAATCAACCCCCCTGCCTCCACCGTCTCTCTTCCCCAGTCCGCTCCCTCGGCGCCGTCAACCACGAAGAATCATCAAATCCCCCTCCAGCAGCAAGTCCGGAGCCAGCAGACGACGTCCGCCCATCCGCCCCACCAGATATCGTTTGGAAAGGCCGGCGCATCCGCGGGAGGAGGCAACGCTTCTTCCCTCTCTCCGGCTGCAAATATCGCCGTCGGGTCCCCCCAAAACTCGGTTTCCAAGAGCTCCGGCAGCCCTCACTCATCGTCCGCCGCCACAAAACCTGCGCCGCCGCCACCTTCGCCAACCCTCCCTGCGCTGCCGTTCCAGAAGCAGCAGCCGTCGGCGGCCAAGAACTCGCCGAGCTCTGCCATTTCCCAACTCCCCTCAGCAGCCAATCGCAGCATGCCCTCCATCCTTGGCAACCCCCAGAGCATGTGCACGAAGCCGCAGCCGCCCTCCTCCCAGCTGCCGAGGCAGCATTCCCCCCAGCAAGCCCAGCTGTTCTTCTCCTACCCTTACATGCAAGCACAAGCCTCCCAGCCGGACGCCGCCGCCGCCGCCGCCGCCGGCAGCTACTTCCAGCAGCACCAGCGCCGGCCGTCGGAACAGCAGGCAGCCCAGCCGAGGCCCGTTTCTTCAACCGGGATGCTTTCTCTAGGCCCCTCGCCCTCTTCCCTCTCGCTGGCGGCCGTCGGCGGCAGCTCCATTCCTCCGGACCCGTCCAAAGGATCCGTTCCGACTGCCTCTCCAGGAAACAACGCAAAGAGCCTCCTCTCTCACCAGCCCCAGTTTCCTGCTGCCTCCCAGCCCATCTCGGCCGCTCATCCTCTGATGTACATCCACGCGATGCAGTCGGTCCCCTTGAAGTCCGACGTATCAGCCGCCGCCTCAGATCAGAAGCCTGCTGCTTCAG

Network for GWHGAAEX003276

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX003276
MGDDGLDWPRAEGQPAVARVGRFRFGQVRVRLDTWRLGVCRTSPTDGLIALHVGTAEHSPFDLKVIERAAAKEEDGAMEMQETSRLRDRGGKKDRDRDRSGRNKRRRGDRMLHGGHREEGEDSSEDSVDEDDDDEEDDSSVAVRLPPPPVPSPTPSVSGMQAHNIRKGYPIKQVRPPGTGSWKVVEEMIGAPIPRKARSSSVKRSQECWVSGGGGSCSGGGDQISRQASMSPARPSPSSTTAPVSPTSSNVSVRKKMKPINVPKHRPPKTSKSSSIQEIEIEVAEVLFGMTRQVPPKQEEHKHDLKESNGSGNEFKSSRVSSPNPISPPANSQPSSTIRPSNPSSNSFPLTATAPKRKRPRMRFDEESATSPPSSTVLPSTSSSSVAKMDTEVIPSTAGAKTDPLSPRSEKNDSTPVENGGSFTDPPISNATSAVVFTANAQQDCVKSENILDLKDSETRDKEEAFPPPKESPAVNLDAAIEESSSASKAAMLSDMQQREEKFSIDLMAPPGKSSMEIESNSNYALEPVETENTPKPEASKAEAEKIEKKPKTEPGENVPEDKNGRKPSTDGSDSRKHAGKERDLDLQLDLEKLDKDVNGANKSQVLKQQQSKVPRADPPNKTEKAGPTASLPVPMQITGWPGGFPPFGFMGQVPPLPPVVSVDGSSNSSKQSFVPSQLRPKRCAAHCYIAQNIHYHQQITRLNPFWSSGAGPTPIYAPKQYNLNTAPPSDPTILGSSPAARTLGSAQEKVGLPVSAPQSCVPAKDKSNASSQFAADVSQRKPSTLQQSSQPGSGSNMLAPAFVFPLNQQQAAAAGTAVAAAHRPGIAKLPPGSGCTAQSSSGTGYAAVGSSGANGSGTNMSFNYPGLPSHEAQYLAFLQNNAYSFPIPAHVGGAPPYRGASPTQAMPFFNLSFYPSQMLHPSQLRLQQQQPQSSQQPQQQNPPQLPYSQQGHQNPSTSSGSSSSQKNTQQSQRVPPAVPIGTSHGCLSSSKQQHLPPSARQLDSEPVGEDAPSTADSRVSQAQKSIYAQKFAVSAHSQNFALIAPAAVSSHSEKQQQQQSQNQVMKMDLTPSQAFAMSFASFGSAGASAAATAGAAPHGLDFSSISQNHALFQSLPEAARHSYQVSAAAAAAAVHSAQQLQQNKKLEDAKSASETGVICEETKISSTAKALANAQQHSLTFSRGDADSPISSILTNSVMDGSSRTLNLIQPPIVGAPRASSRPASAVPSSNSVTNPAHLLPQQHQHQVLQLQKQHQQLQLQQQLQQHQRAKSASSHSNVNIYTDRLPVSSASSKFPQGLAGFPPALIQSSANSQNASQWKAATRAINPPASTVSLPQSAPSAPSTTKNHQIPLQQQVRSQQTTSAHPPHQISFGKAGASAGGGNASSLSPAANIAVGSPQNSVSKSSGSPHSSSAATKPAPPPPSPTLPALPFQKQQPSAAKNSPSSAISQLPSAANRSMPSILGNPQSMCTKPQPPSSQLPRQHSPQQAQLFFSYPYMQAQASQPDAAAAAAAGSYFQQHQRRPSEQQAAQPRPVSSTGMLSLGPSPSSLSLAAVGGSSIPPDPSKGSVPTASPGNNAKSLLSHQPQFPAASQPISAAHPLMYIHAMQSVPLKSDVSAAASDQKPAAS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	58.540
SRP064423	SRR2545915	Juvenile tuber	57.910
SRP108465	SRR5643513	five period of Gastrodia elata	67.230
	SRR5643514	five period of Gastrodia elata	59.080
	SRR5643515	five period of Gastrodia elata	76.340
	SRR5643524	five period of Gastrodia elata	61.640
	SRR5643525	five period of Gastrodia elata	113.960
	SRR5643528	five period of Gastrodia elata	73.350
	SRR5643658	five period of Gastrodia elata	112.930
	SRR5643659	five period of Gastrodia elata	87.740
	SRR5643660	five period of Gastrodia elata	86.430
	SRR5643661	five period of Gastrodia elata	102.870
	SRR5643662	five period of Gastrodia elata	102.240
	SRR5643663	five period of Gastrodia elata	92.990
	SRR5643664	five period of Gastrodia elata	152.500
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	79.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	105.300
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	70.350
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	79.260
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	89.620
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	97.830
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	85.480
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	87.680
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	63.950
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	74.030
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	63.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	63.320
SRP279888	Gastro	Gastrodia elata tuber	74.02
	Juven	Juvenile tuber	88.60
	Mother_Gastro	Mother tuber of Gastrodia elata	134.12
	Mother_Juven	Mother tuber of Juvenile	222.79